Thank you for allowing me to use your software. I am Japanese, so I hope you will understand that there are some inappropriate expressions. I would like to ask you one question.
I would like to know how to overlay the docked protein (osh4)-ligand (cholesterol) complex (the gray one in the figure) and the complex on the PDB.
Aim
I would like to know how well the docked data matches the data in the PDB.
Methods I have tried
I did it based on the following link from Chimera.
https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html