Hi Subha,

This problem was fixed 11 months ago, so please update to a newer version of Chimera.  Also, please report bugs by using the “Report A Bug” entry in Chimera’s Help menu rather than sending mail to the chimera-users list.  Thanks!

—Eric

Eric Pettersen

UCSF Computer Graphics Lab

On Jun 20, 2016, at 10:19 AM, Subha Kalyaanamoorthy <kalyaana@ualberta.ca> wrote:

Hi There,

I am trying to run charge calculation using Antechamber in chimera, but getting an error related to library not found.

_______________________

Running ANTECHAMBER command: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/antechamber -ek qm_theory='AM1', -i /var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.in.mol2 -fi mol2 -o /var/folders/pq/d4fvmdj542gcnqqjbfm554hr0000gt/T/tmpJCy8sw/ante.out.mol2 -fo mol2 -c bcc -nc 1 -j 5 -s 2

(UNK) 

(UNK) dyld: Library not loaded: /usr/local/lib/libquadmath.0.dylib

(UNK)   Referenced from: /Applications/Chimera.app/Contents/Resources/lib/libgfortran.3.dylib

(UNK)   Reason: image not found

(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac

(UNK) 

(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff

(UNK) Total number of electrons: 302; net charge: 1

(UNK) 

(UNK) Running: /Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i sqm.in -o sqm.out

(UNK) Error: cannot run "/Applications/Chimera.app/Contents/Resources/bin/amber14/bin/sqm -O -i sqm.in -o sqm.out" of bcc() in charge.c properly, exit

Failure running ANTECHAMBER for residue UNK

Check reply log for details

-----------------------

FYI, I am running on OS X EI Capitan version 10.11.5

Thanks,

Subha

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