Hi Sanjeev, Take a look at this chimera-users message: [Chimera-users] easy way to make alignments in chimera . I think it answers most of your questions. The only change you would need to make is that where it uses "saveStockholm" you would instead use "saveFASTA". --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On Oct 27, 2014, at 2:25 PM, Sanjeev Sariya <s.sariya_work@ymail.com> wrote:
Hi Chimera Developers,
I've used chimera mostly by GUI inerface [click]. How do I get the match-align work from command line in a python script? I read a good description at: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2012-September/007934.html
work flow of the script is: take in 2 pdb files and match->align them.
I think, I will have to open them before running 'mols = openModels.list(modelTypes=[Molecule])' ?
How do I get the output saved in a FASTA file without MAV interface?
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