Awhile ago we did discuss periodic automatic session saving for this purpose. We felt that since it would produce apparently random mysterious “freezing” of Chimera from time to time as sessions were saved (mysterious to new/casual users at least), we wouldn’t want to have it turned on by default — which substantially lessens its value. It would still have value of course, but with that restriction it wasn’t deemed sufficiently worthwhile to get on the “to do” list. —Eric
On Nov 28, 2019, at 6:27 AM, Boaz Shaanan <bshaanan@bgu.ac.il> wrote:
Hi,
Is not possible to install an automatic 'save session' at intervals determined by the user just as done in an MS word session? This at least may rescue the last operations. Following my own Chimera 'disasters' of this kind, I actually save session quite frequently when it becomes heavily loaded, particularly prior to a major new operation. My 2p.
Happy and warm Thanksgiving.
Boaz
Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel
E-mail: bshaanan@bgu.ac.il Phone: 972-8-647-2220 Fax: 972-8-647-2992 or 972-8-646-1710
________________________________________ From: Chimera-users <chimera-users-bounces@cgl.ucsf.edu> on behalf of chimera-users-request@cgl.ucsf.edu <chimera-users-request@cgl.ucsf.edu> Sent: Wednesday, November 27, 2019 11:07 PM To: chimera-users@cgl.ucsf.edu Subject: Chimera-users Digest, Vol 199, Issue 25
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Today's Topics:
1. secondary structure restraints and crosslink restraints (Fr?nze M?ller) 2. Undo option? (Luca Pellegrini) 3. Re: Undo option? (Elaine Meng) 4. Re: secondary structure restraints and crosslink restraints (Elaine Meng) 5. Re: Auto-associate define attribute/render by attribute (Elaine Meng)
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Message: 1 Date: Wed, 27 Nov 2019 13:50:32 +0100 From: Fr?nze M?ller <fraenze.mueller@biologie.uni-freiburg.de> To: chimera-users@cgl.ucsf.edu Subject: [Chimera-users] secondary structure restraints and crosslink restraints Message-ID: <cde7ad0e-503b-b0cc-5466-006d64019f5a@biologie.uni-freiburg.de> Content-Type: text/plain; charset="utf-8"; Format="flowed"
Dear Chimera developers,
I would like to perform homology modelling using Modeller in Chimera. At the moment I am using just distance restraints formatted like in the Chimera documentation (res1 res2 dist stdev). This file only contains crosslinking data. Is there a way to also include secondary structure restraints, that can serve as additional information during homology modelling? Or can I provide some were another file including this information separate from the crosslink information?
Best wishes and Thanks for your help,
-- *Fr?nze M?ller* Postdoctoral Researcher
*Biochemistry and Functional Proteomics, Warscheid Lab* University of Freiburg|Sch?nzlestr. 1|79104 Freiburg|Germany Phone +49 761 203 2681