I have been measuring surface volumes by using the atom box option in order to obtain a surface slice volume and then the volume measure. But how could I use the atom box in the command line?
import chimera
import os
from chimera import runCommand
runCommand(’sel :2.A,19.A,25.A, 5.B, 23.B, 26.B’) # to define the box
runCommand(‘atomBox ????’)
runCommand('measure volume #0')
runCommand('close all')