On 9/19/15 1:29 AM, "高木友理子" <kagaribi-firefly@bs.s.u-tokyo.ac.jp> wrote:
Dear Chimera creator,
I use Chimera to analyse protein-ligand interaction. Especially, I would like to find H-bond between these. I clicked HBonds and tried to search H-bond within selected distance. However,I could not. I guess the reason is that I was not able to understand "Relax constraints" in H-Bond parameter window. I ,of course, checked chimera's help. What is relax constraints? What does 0.4 angstroms indicate? Is this the Max distance between ligand and protein residue? I would like to find H-bond between them within selected angstrom. What should I do to know that? Please teach me how to do. Thank you for being patient with my English.
Best regards,
Yuriko Takagi Tokyo university student