Hi,<br><br>    I want to know how to color the cryoem map according to the local resolution and also according to the local cross correlation of the pdb structure with the map.<br><br>   Moreover I am unable to connect to the internet in chimera inspite of providing the proxy address and port, how should I give the user name and password for authentication to connect inside chimera since I get authentication error.<br>

<br>Regards<br>Rakesh<br><br><div class="gmail_quote">On 7 July 2012 03:48, Tom Goddard <span dir="ltr">&lt;<a href="mailto:goddard@sonic.net" target="_blank">goddard@sonic.net</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">


  
    
  
  <div bgcolor="#FFFFFF" text="#000000">
    <div>You can choose a map contour so it
      encloses the expected number of cubic Angstroms as described here:<br>
      <br>
         
<a href="http://www.cgl.ucsf.edu/chimera/data/tutorials/eman07/chimera-eman-2007.html#part2" target="_blank">http://www.cgl.ucsf.edu/chimera/data/tutorials/eman07/chimera-eman-2007.html#part2</a><span class="HOEnZb"><font color="#888888"><br>


      <br>
        Tom<br>
      <br>
    </font></span></div><div><div class="h5">
    <blockquote type="cite">Hello,<br>
      <br>
           My name is Rakesh. I would like to know how to set the
      density threshold according to the molecular mass of the protein
      in the cryoem map. I would also like to know how to calculate the
      molecular mass of a particular segment after segmentation in
      cryoem map.<br>
      <br>
      <pre style="font-family:arial,helvetica,sans-serif"><font>Regards
Rakesh Ramachandran
PhD Student
Molecular Biophysics Unit,
Indian Institute of Science,
Bangalore - 560012
India</font>
</pre>
    </blockquote>
    <br>
  </div></div></div>

</blockquote></div><br>