Hi Eric, Thanks for the prompt reply. Yes, my pdb is a single file with multiple MODEL records. The numbers on the records are consecutive, so I guess that's not the problem. My original tpr + trr files are a total of ~25M (do you think your email can handle it?). The pdb file was >100M but I've tried on a smaller one (with only the first 4 frames of the run) and get the same error message. I guess email can handle the small pdb file (1M zipped), I will send this in a separate email. Let me know if/how I can send you the tpr/trr files. Andrea Eric Pettersen wrote:
Hi Andrea, I _believe_ this indicates that your frames aren't consecutively numbered. Is your PDB input a single file with multiple MODEL records. If so, are the numbers on these MODEL records consecutive? Chimera should probably handle non-consecutive numbering (at least when there's a regular "stride") but it doesn't yet. I'd also be interested in looking at your tpr/trr problem if you could get the files to me. How big are they?
--Eric
Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu
-- Andrea C. Vaiana Theoretical Biology and Biophysics Mail stop K710, T-10 Los Alamos, NM 87545 Los Alamos National Laboratory