Unfortunately, no. You can save all the structures from a single cluster into a PDB file by selecting the cluster in the NMRCluster panel, and then using the "Write PDB" button in the Model Panel; but there is currently no way to do that for all clusters in a single operation. I'll open a ticket for the enhancement, but I'm not sure when it will actually be implemented, given all the other stuff we're working on. Conrad Austin B. Yongye wrote:
Hi chimera-users/developers, Is there a way to save all the structures (not only the representative structures) of all the clusters identified from an ensemble cluster analysis into their respective clusters? The g_cluster tool of gromacs does these, but I don't think it uses Kelley values to determine the optimal number of clusters. Any help will be greatly appreciated. I would like to perform further analyses on each cluster. Thanks, Austin-
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