francescoall the bestHi Eric:I tried with my files. Thanks a lot for allowing NAMD users to catch segname segments with CHIMERAOn Wed, Apr 1, 2015 at 8:12 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:Hmm, Chimera was being a bit of stickler in that it wasn't reading the columns that included the segment ID unless the ATOM records had a full 80 characters. The ATOM records in your file are a little shorter (78 characters). I have modified the Chimera code to be a little more flexible in that regard. If you get tonight's daily build, it will process the segment IDs in your file. Look for builds dated April 1 or later.--EricOn Apr 1, 2015, at 8:27 AM, Francesco Pietra <chiendarret@gmail.com> wrote:<miniSOG_O2_box_ion.pdb>Attached is a pdb file from work that I recently published. If relevant, I could also provide psf/dcd. In fact, my main interest is in describing the MD trajectory with chimera/centroid, while highlighting in different colors the various chains and residues of particular interestHi Eric:If I did correctly, it does not work.Thanks a lot for your interestfrancescodefine centroidOn Mon, Mar 30, 2015 at 11:32 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:Hi Francesco,It should be available as the atom attribute pdbSegment, e.g. "color red @/pdbSegment=XY2". If that doesn't work, please let me know and attach a PDB file with segment info in it that I can use for testing.--Eric
Eric Pettersen
UCSF Computer Graphics Lab
http://www.cgl.ucsf.eduOn Mar 28, 2015, at 6:34 AM, Francesco Pietra <chiendarret@gmail.com> wrote:_______________________________________________Hello:May I ask whether there is till a problem in having CHIMERA understanding segname? For those working with XPLOR (NAMD, for example) and multichain proteins, rendering results with CHIMERA becomes very tedious (having to use atom indexes)Thanksfrancesco pietra
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