The following problems occurred while reading PDB file for Asterina pectinifera-YET.pdb warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 3 warning: Ignored bad PDB record found on line 4 warning: Ignored bad PDB record found on line 5 warning: Ignored bad PDB record found on line 6 warning: Ignored bad PDB record found on line 7 warning: Ignored bad PDB record found on line 8 warning: Ignored bad PDB record found on line 9 warning: Ignored bad PDB record found on line 10 warning: Ignored bad PDB record found on line 11 warning: Ignored bad PDB record found on line 12 warning: Ignored bad PDB record found on line 13 warning: Ignored bad PDB record found on line 15 Model 0 (Asterina pectinifera-YET.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Culex quinquefasciatus.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 4 warning: Ignored bad PDB record found on line 2150 warning: Ignored bad PDB record found on line 2151 warning: Ignored bad PDB record found on line 2152 warning: Ignored bad PDB record found on line 2153 warning: Ignored bad PDB record found on line 2154 warning: Ignored bad PDB record found on line 2155 warning: Ignored bad PDB record found on line 2156 warning: Ignored bad PDB record found on line 2157 warning: Ignored bad PDB record found on line 2158 warning: Ignored bad PDB record found on line 2159 warning: Ignored bad PDB record found on line 2160 warning: Ignored bad PDB record found on line 2161 warning: Ignored bad PDB record found on line 2162 warning: Ignored bad PDB record found on line 2163 warning: Ignored bad PDB record found on line 2164 warning: Ignored bad PDB record found on line 2165 warning: Ignored bad PDB record found on line 2166 warning: Ignored bad PDB record found on line 2167 warning: Ignored bad PDB record found on line 2168 warning: Ignored bad PDB record found on line 2169 warning: Ignored bad PDB record found on line 2170 warning: Ignored bad PDB record found on line 2171 warning: Ignored bad PDB record found on line 2172 warning: Ignored bad PDB record found on line 2173 warning: Ignored bad PDB record found on line 2174 warning: Ignored bad PDB record found on line 2175 warning: Ignored bad PDB record found on line 2176 warning: Ignored bad PDB record found on line 2177 warning: Ignored bad PDB record found on line 2178 warning: Ignored bad PDB record found on line 2179 warning: Ignored bad PDB record found on line 2180 warning: Ignored bad PDB record found on line 2181 warning: Ignored bad PDB record found on line 2182 warning: Ignored bad PDB record found on line 2183 warning: Ignored bad PDB record found on line 2184 warning: Ignored bad PDB record found on line 2185 warning: Ignored bad PDB record found on line 2186 warning: Ignored bad PDB record found on line 2187 warning: Ignored bad PDB record found on line 2188 warning: Ignored bad PDB record found on line 2189 warning: Ignored bad PDB record found on line 2190 warning: Ignored bad PDB record found on line 2191 warning: Ignored bad PDB record found on line 2192 warning: Ignored bad PDB record found on line 2193 warning: Ignored bad PDB record found on line 2194 warning: Ignored bad PDB record found on line 2195 warning: Ignored bad PDB record found on line 2196 warning: Ignored bad PDB record found on line 2197 warning: Ignored bad PDB record found on line 2198 warning: Ignored bad PDB record found on line 2199 warning: Ignored bad PDB record found on line 2200 warning: Ignored bad PDB record found on line 2201 warning: Ignored bad PDB record found on line 2202 warning: Ignored bad PDB record found on line 2203 warning: Ignored bad PDB record found on line 2204 warning: Ignored bad PDB record found on line 2205 warning: Ignored bad PDB record found on line 2206 warning: Ignored bad PDB record found on line 2207 warning: Ignored bad PDB record found on line 2208 warning: Ignored bad PDB record found on line 2209 warning: Ignored bad PDB record found on line 2210 warning: Ignored bad PDB record found on line 2211 warning: Ignored bad PDB record found on line 2212 warning: Ignored bad PDB record found on line 2213 warning: Ignored bad PDB record found on line 2214 warning: Ignored bad PDB record found on line 2215 warning: Ignored bad PDB record found on line 2216 warning: Ignored bad PDB record found on line 2217 warning: Ignored bad PDB record found on line 2218 warning: Ignored bad PDB record found on line 2219 warning: Ignored bad PDB record found on line 2220 warning: Ignored bad PDB record found on line 2221 warning: Ignored bad PDB record found on line 2222 warning: Ignored bad PDB record found on line 2223 warning: Ignored bad PDB record found on line 2224 warning: Ignored bad PDB record found on line 2225 warning: Ignored bad PDB record found on line 2226 warning: Ignored bad PDB record found on line 2227 warning: Ignored bad PDB record found on line 2228 warning: Ignored bad PDB record found on line 2229 warning: Ignored bad PDB record found on line 2230 warning: Ignored bad PDB record found on line 2231 warning: Ignored bad PDB record found on line 2232 warning: Ignored bad PDB record found on line 2233 warning: Ignored bad PDB record found on line 2234 warning: Ignored bad PDB record found on line 2235 warning: Ignored bad PDB record found on line 2236 warning: Ignored bad PDB record found on line 2237 warning: Ignored bad PDB record found on line 2238 warning: Ignored bad PDB record found on line 2239 warning: Ignored bad PDB record found on line 2240 warning: Ignored bad PDB record found on line 2241 warning: Ignored bad PDB record found on line 2242 warning: Ignored bad PDB record found on line 2243 warning: Ignored bad PDB record found on line 2244 warning: Ignored bad PDB record found on line 2245 warning: Ignored bad PDB record found on line 2246 warning: Ignored bad PDB record found on line 2247 Model 1 (Culex quinquefasciatus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Heloderma horridum horridum.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 372 warning: Ignored bad PDB record found on line 373 warning: Ignored bad PDB record found on line 374 warning: Ignored bad PDB record found on line 375 warning: Ignored bad PDB record found on line 376 warning: Ignored bad PDB record found on line 377 warning: Ignored bad PDB record found on line 378 warning: Ignored bad PDB record found on line 379 warning: Ignored bad PDB record found on line 380 warning: Ignored bad PDB record found on line 381 warning: Ignored bad PDB record found on line 382 warning: Ignored bad PDB record found on line 383 warning: Ignored bad PDB record found on line 384 warning: Ignored bad PDB record found on line 385 warning: Ignored bad PDB record found on line 386 warning: Ignored bad PDB record found on line 387 warning: Ignored bad PDB record found on line 388 warning: Ignored bad PDB record found on line 389 warning: Ignored bad PDB record found on line 390 warning: Ignored bad PDB record found on line 391 warning: Ignored bad PDB record found on line 392 warning: Ignored bad PDB record found on line 393 warning: Ignored bad PDB record found on line 394 warning: Ignored bad PDB record found on line 395 warning: Ignored bad PDB record found on line 396 warning: Ignored bad PDB record found on line 397 warning: Ignored bad PDB record found on line 398 warning: Ignored bad PDB record found on line 399 warning: Ignored bad PDB record found on line 400 warning: Ignored bad PDB record found on line 401 warning: Ignored bad PDB record found on line 402 Model 2 (Heloderma horridum horridum.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Mesobuthus tamulus.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 4 warning: Ignored bad PDB record found on line 1699 warning: Ignored bad PDB record found on line 1700 warning: Ignored bad PDB record found on line 1701 warning: Ignored bad PDB record found on line 1702 warning: Ignored bad PDB record found on line 1703 warning: Ignored bad PDB record found on line 1704 warning: Ignored bad PDB record found on line 1705 warning: Ignored bad PDB record found on line 1706 warning: Ignored bad PDB record found on line 1707 warning: Ignored bad PDB record found on line 1708 warning: Ignored bad PDB record found on line 1709 warning: Ignored bad PDB record found on line 1710 warning: Ignored bad PDB record found on line 1711 warning: Ignored bad PDB record found on line 1712 warning: Ignored bad PDB record found on line 1713 warning: Ignored bad PDB record found on line 1714 warning: Ignored bad PDB record found on line 1715 warning: Ignored bad PDB record found on line 1716 warning: Ignored bad PDB record found on line 1717 warning: Ignored bad PDB record found on line 1718 warning: Ignored bad PDB record found on line 1719 warning: Ignored bad PDB record found on line 1720 warning: Ignored bad PDB record found on line 1721 warning: Ignored bad PDB record found on line 1722 warning: Ignored bad PDB record found on line 1723 warning: Ignored bad PDB record found on line 1724 warning: Ignored bad PDB record found on line 1725 warning: Ignored bad PDB record found on line 1726 warning: Ignored bad PDB record found on line 1727 warning: Ignored bad PDB record found on line 1728 warning: Ignored bad PDB record found on line 1729 warning: Ignored bad PDB record found on line 1730 warning: Ignored bad PDB record found on line 1731 warning: Ignored bad PDB record found on line 1732 warning: Ignored bad PDB record found on line 1733 warning: Ignored bad PDB record found on line 1734 warning: Ignored bad PDB record found on line 1735 warning: Ignored bad PDB record found on line 1736 warning: Ignored bad PDB record found on line 1737 warning: Ignored bad PDB record found on line 1738 warning: Ignored bad PDB record found on line 1739 warning: Ignored bad PDB record found on line 1740 warning: Ignored bad PDB record found on line 1741 warning: Ignored bad PDB record found on line 1742 warning: Ignored bad PDB record found on line 1743 warning: Ignored bad PDB record found on line 1744 warning: Ignored bad PDB record found on line 1745 warning: Ignored bad PDB record found on line 1746 warning: Ignored bad PDB record found on line 1747 warning: Ignored bad PDB record found on line 1748 warning: Ignored bad PDB record found on line 1749 warning: Ignored bad PDB record found on line 1750 warning: Ignored bad PDB record found on line 1751 warning: Ignored bad PDB record found on line 1752 warning: Ignored bad PDB record found on line 1753 warning: Ignored bad PDB record found on line 1754 warning: Ignored bad PDB record found on line 1755 warning: Ignored bad PDB record found on line 1756 warning: Ignored bad PDB record found on line 1757 warning: Ignored bad PDB record found on line 1758 warning: Ignored bad PDB record found on line 1759 warning: Ignored bad PDB record found on line 1760 warning: Ignored bad PDB record found on line 1761 warning: Ignored bad PDB record found on line 1762 warning: Ignored bad PDB record found on line 1763 warning: Ignored bad PDB record found on line 1764 warning: Ignored bad PDB record found on line 1765 warning: Ignored bad PDB record found on line 1766 warning: Ignored bad PDB record found on line 1767 warning: Ignored bad PDB record found on line 1768 warning: Ignored bad PDB record found on line 1769 warning: Ignored bad PDB record found on line 1770 warning: Ignored bad PDB record found on line 1771 warning: Ignored bad PDB record found on line 1772 warning: Ignored bad PDB record found on line 1773 warning: Ignored bad PDB record found on line 1774 warning: Ignored bad PDB record found on line 1775 warning: Ignored bad PDB record found on line 1776 warning: Ignored bad PDB record found on line 1777 warning: Ignored bad PDB record found on line 1778 warning: Ignored bad PDB record found on line 1779 warning: Ignored bad PDB record found on line 1780 warning: Ignored bad PDB record found on line 1781 Model 4 (Mesobuthus tamulus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Mirabilis jalapa.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 834 warning: Ignored bad PDB record found on line 835 warning: Ignored bad PDB record found on line 836 warning: Ignored bad PDB record found on line 837 warning: Ignored bad PDB record found on line 838 warning: Ignored bad PDB record found on line 839 warning: Ignored bad PDB record found on line 840 warning: Ignored bad PDB record found on line 841 warning: Ignored bad PDB record found on line 842 warning: Ignored bad PDB record found on line 843 warning: Ignored bad PDB record found on line 844 warning: Ignored bad PDB record found on line 845 warning: Ignored bad PDB record found on line 846 warning: Ignored bad PDB record found on line 847 warning: Ignored bad PDB record found on line 848 warning: Ignored bad PDB record found on line 849 warning: Ignored bad PDB record found on line 850 warning: Ignored bad PDB record found on line 851 warning: Ignored bad PDB record found on line 852 warning: Ignored bad PDB record found on line 853 warning: Ignored bad PDB record found on line 854 warning: Ignored bad PDB record found on line 855 warning: Ignored bad PDB record found on line 856 warning: Ignored bad PDB record found on line 857 warning: Ignored bad PDB record found on line 858 warning: Ignored bad PDB record found on line 859 warning: Ignored bad PDB record found on line 860 warning: Ignored bad PDB record found on line 861 warning: Ignored bad PDB record found on line 862 warning: Ignored bad PDB record found on line 863 warning: Ignored bad PDB record found on line 864 warning: Ignored bad PDB record found on line 865 warning: Ignored bad PDB record found on line 866 warning: Ignored bad PDB record found on line 867 warning: Ignored bad PDB record found on line 868 warning: Ignored bad PDB record found on line 869 warning: Ignored bad PDB record found on line 870 warning: Ignored bad PDB record found on line 871 warning: Ignored bad PDB record found on line 872 warning: Ignored bad PDB record found on line 873 warning: Ignored bad PDB record found on line 874 warning: Ignored bad PDB record found on line 875 warning: Ignored bad PDB record found on line 876 warning: Ignored bad PDB record found on line 877 warning: Ignored bad PDB record found on line 878 warning: Ignored bad PDB record found on line 879 warning: Ignored bad PDB record found on line 880 warning: Ignored bad PDB record found on line 881 warning: Ignored bad PDB record found on line 882 warning: Ignored bad PDB record found on line 883 warning: Ignored bad PDB record found on line 884 warning: Ignored bad PDB record found on line 885 Model 5 (Mirabilis jalapa.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Schizosaccharomyces japonicus.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 4 warning: Ignored bad PDB record found on line 4363 warning: Ignored bad PDB record found on line 4364 warning: Ignored bad PDB record found on line 4365 warning: Ignored bad PDB record found on line 4366 warning: Ignored bad PDB record found on line 4367 warning: Ignored bad PDB record found on line 4368 warning: Ignored bad PDB record found on line 4369 warning: Ignored bad PDB record found on line 4370 warning: Ignored bad PDB record found on line 4371 warning: Ignored bad PDB record found on line 4372 warning: Ignored bad PDB record found on line 4373 warning: Ignored bad PDB record found on line 4374 warning: Ignored bad PDB record found on line 4375 warning: Ignored bad PDB record found on line 4376 warning: Ignored bad PDB record found on line 4377 warning: Ignored bad PDB record found on line 4378 warning: Ignored bad PDB record found on line 4379 warning: Ignored bad PDB record found on line 4380 warning: Ignored bad PDB record found on line 4381 warning: Ignored bad PDB record found on line 4382 warning: Ignored bad PDB record found on line 4383 warning: Ignored bad PDB record found on line 4384 warning: Ignored bad PDB record found on line 4385 warning: Ignored bad PDB record found on line 4386 warning: Ignored bad PDB record found on line 4387 warning: Ignored bad PDB record found on line 4388 warning: Ignored bad PDB record found on line 4389 warning: Ignored bad PDB record found on line 4390 warning: Ignored bad PDB record found on line 4391 warning: Ignored bad PDB record found on line 4392 warning: Ignored bad PDB record found on line 4393 warning: Ignored bad PDB record found on line 4394 warning: Ignored bad PDB record found on line 4395 warning: Ignored bad PDB record found on line 4396 warning: Ignored bad PDB record found on line 4397 warning: Ignored bad PDB record found on line 4398 warning: Ignored bad PDB record found on line 4399 warning: Ignored bad PDB record found on line 4400 warning: Ignored bad PDB record found on line 4401 warning: Ignored bad PDB record found on line 4402 warning: Ignored bad PDB record found on line 4403 warning: Ignored bad PDB record found on line 4404 warning: Ignored bad PDB record found on line 4405 warning: Ignored bad PDB record found on line 4406 warning: Ignored bad PDB record found on line 4407 warning: Ignored bad PDB record found on line 4408 warning: Ignored bad PDB record found on line 4409 warning: Ignored bad PDB record found on line 4410 warning: Ignored bad PDB record found on line 4411 warning: Ignored bad PDB record found on line 4412 warning: Ignored bad PDB record found on line 4413 warning: Ignored bad PDB record found on line 4414 warning: Ignored bad PDB record found on line 4415 warning: Ignored bad PDB record found on line 4416 warning: Ignored bad PDB record found on line 4417 warning: Ignored bad PDB record found on line 4418 warning: Ignored bad PDB record found on line 4419 warning: Ignored bad PDB record found on line 4420 warning: Ignored bad PDB record found on line 4421 warning: Ignored bad PDB record found on line 4422 warning: Ignored bad PDB record found on line 4423 warning: Ignored bad PDB record found on line 4424 warning: Ignored bad PDB record found on line 4425 warning: Ignored bad PDB record found on line 4426 warning: Ignored bad PDB record found on line 4427 warning: Ignored bad PDB record found on line 4428 warning: Ignored bad PDB record found on line 4429 warning: Ignored bad PDB record found on line 4430 warning: Ignored bad PDB record found on line 4431 warning: Ignored bad PDB record found on line 4432 warning: Ignored bad PDB record found on line 4433 warning: Ignored bad PDB record found on line 4434 warning: Ignored bad PDB record found on line 4435 warning: Ignored bad PDB record found on line 4436 warning: Ignored bad PDB record found on line 4437 warning: Ignored bad PDB record found on line 4438 warning: Ignored bad PDB record found on line 4439 warning: Ignored bad PDB record found on line 4440 warning: Ignored bad PDB record found on line 4441 warning: Ignored bad PDB record found on line 4442 warning: Ignored bad PDB record found on line 4443 warning: Ignored bad PDB record found on line 4444 warning: Ignored bad PDB record found on line 4445 warning: Ignored bad PDB record found on line 4446 warning: Ignored bad PDB record found on line 4447 warning: Ignored bad PDB record found on line 4448 warning: Ignored bad PDB record found on line 4449 warning: Ignored bad PDB record found on line 4450 warning: Ignored bad PDB record found on line 4451 warning: Ignored bad PDB record found on line 4452 warning: Ignored bad PDB record found on line 4453 warning: Ignored bad PDB record found on line 4454 warning: Ignored bad PDB record found on line 4455 warning: Ignored bad PDB record found on line 4456 warning: Ignored bad PDB record found on line 4457 warning: Ignored bad PDB record found on line 4458 warning: Ignored bad PDB record found on line 4459 warning: Ignored bad PDB record found on line 4460 warning: Ignored bad PDB record found on line 4461 warning: Ignored bad PDB record found on line 4462 warning: Ignored bad PDB record found on line 4463 warning: Ignored bad PDB record found on line 4464 warning: Ignored bad PDB record found on line 4465 warning: Ignored bad PDB record found on line 4466 warning: Ignored bad PDB record found on line 4467 warning: Ignored bad PDB record found on line 4468 warning: Ignored bad PDB record found on line 4469 warning: Ignored bad PDB record found on line 4470 warning: Ignored bad PDB record found on line 4471 warning: Ignored bad PDB record found on line 4472 warning: Ignored bad PDB record found on line 4473 warning: Ignored bad PDB record found on line 4474 warning: Ignored bad PDB record found on line 4475 warning: Ignored bad PDB record found on line 4476 warning: Ignored bad PDB record found on line 4477 warning: Ignored bad PDB record found on line 4478 warning: Ignored bad PDB record found on line 4479 warning: Ignored bad PDB record found on line 4480 warning: Ignored bad PDB record found on line 4481 warning: Ignored bad PDB record found on line 4482 warning: Ignored bad PDB record found on line 4483 warning: Ignored bad PDB record found on line 4484 warning: Ignored bad PDB record found on line 4485 warning: Ignored bad PDB record found on line 4486 warning: Ignored bad PDB record found on line 4487 warning: Ignored bad PDB record found on line 4488 warning: Ignored bad PDB record found on line 4489 warning: Ignored bad PDB record found on line 4490 warning: Ignored bad PDB record found on line 4491 warning: Ignored bad PDB record found on line 4492 warning: Ignored bad PDB record found on line 4493 warning: Ignored bad PDB record found on line 4494 warning: Ignored bad PDB record found on line 4495 warning: Ignored bad PDB record found on line 4496 warning: Ignored bad PDB record found on line 4497 warning: Ignored bad PDB record found on line 4498 warning: Ignored bad PDB record found on line 4499 warning: Ignored bad PDB record found on line 4500 warning: Ignored bad PDB record found on line 4501 warning: Ignored bad PDB record found on line 4502 warning: Ignored bad PDB record found on line 4503 warning: Ignored bad PDB record found on line 4504 warning: Ignored bad PDB record found on line 4505 warning: Ignored bad PDB record found on line 4506 warning: Ignored bad PDB record found on line 4507 warning: Ignored bad PDB record found on line 4508 warning: Ignored bad PDB record found on line 4509 warning: Ignored bad PDB record found on line 4510 warning: Ignored bad PDB record found on line 4511 warning: Ignored bad PDB record found on line 4512 warning: Ignored bad PDB record found on line 4513 warning: Ignored bad PDB record found on line 4514 warning: Ignored bad PDB record found on line 4515 warning: Ignored bad PDB record found on line 4516 warning: Ignored bad PDB record found on line 4517 warning: Ignored bad PDB record found on line 4518 warning: Ignored bad PDB record found on line 4519 warning: Ignored bad PDB record found on line 4520 warning: Ignored bad PDB record found on line 4521 warning: Ignored bad PDB record found on line 4522 warning: Ignored bad PDB record found on line 4523 warning: Ignored bad PDB record found on line 4524 warning: Ignored bad PDB record found on line 4525 warning: Ignored bad PDB record found on line 4526 warning: Ignored bad PDB record found on line 4527 warning: Ignored bad PDB record found on line 4528 warning: Ignored bad PDB record found on line 4529 warning: Ignored bad PDB record found on line 4530 warning: Ignored bad PDB record found on line 4531 warning: Ignored bad PDB record found on line 4532 warning: Ignored bad PDB record found on line 4533 warning: Ignored bad PDB record found on line 4534 warning: Ignored bad PDB record found on line 4535 warning: Ignored bad PDB record found on line 4536 warning: Ignored bad PDB record found on line 4537 warning: Ignored bad PDB record found on line 4538 warning: Ignored bad PDB record found on line 4539 warning: Ignored bad PDB record found on line 4540 warning: Ignored bad PDB record found on line 4541 warning: Ignored bad PDB record found on line 4542 warning: Ignored bad PDB record found on line 4543 warning: Ignored bad PDB record found on line 4544 warning: Ignored bad PDB record found on line 4545 warning: Ignored bad PDB record found on line 4546 warning: Ignored bad PDB record found on line 4547 warning: Ignored bad PDB record found on line 4548 warning: Ignored bad PDB record found on line 4549 warning: Ignored bad PDB record found on line 4550 warning: Ignored bad PDB record found on line 4551 Model 6 (Schizosaccharomyces japonicus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Streptomyces violaceoruber.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 1515 warning: Ignored bad PDB record found on line 1516 warning: Ignored bad PDB record found on line 1517 warning: Ignored bad PDB record found on line 1518 warning: Ignored bad PDB record found on line 1519 warning: Ignored bad PDB record found on line 1520 warning: Ignored bad PDB record found on line 1521 warning: Ignored bad PDB record found on line 1522 warning: Ignored bad PDB record found on line 1523 warning: Ignored bad PDB record found on line 1524 warning: Ignored bad PDB record found on line 1525 warning: Ignored bad PDB record found on line 1526 warning: Ignored bad PDB record found on line 1527 warning: Ignored bad PDB record found on line 1528 warning: Ignored bad PDB record found on line 1529 warning: Ignored bad PDB record found on line 1530 warning: Ignored bad PDB record found on line 1531 warning: Ignored bad PDB record found on line 1532 warning: Ignored bad PDB record found on line 1533 warning: Ignored bad PDB record found on line 1534 warning: Ignored bad PDB record found on line 1535 warning: Ignored bad PDB record found on line 1536 warning: Ignored bad PDB record found on line 1537 warning: Ignored bad PDB record found on line 1538 warning: Ignored bad PDB record found on line 1539 warning: Ignored bad PDB record found on line 1540 warning: Ignored bad PDB record found on line 1541 warning: Ignored bad PDB record found on line 1542 warning: Ignored bad PDB record found on line 1543 warning: Ignored bad PDB record found on line 1544 warning: Ignored bad PDB record found on line 1545 warning: Ignored bad PDB record found on line 1546 warning: Ignored bad PDB record found on line 1547 warning: Ignored bad PDB record found on line 1548 warning: Ignored bad PDB record found on line 1549 warning: Ignored bad PDB record found on line 1550 warning: Ignored bad PDB record found on line 1551 warning: Ignored bad PDB record found on line 1552 warning: Ignored bad PDB record found on line 1553 warning: Ignored bad PDB record found on line 1554 warning: Ignored bad PDB record found on line 1555 warning: Ignored bad PDB record found on line 1556 warning: Ignored bad PDB record found on line 1557 warning: Ignored bad PDB record found on line 1558 warning: Ignored bad PDB record found on line 1559 warning: Ignored bad PDB record found on line 1560 warning: Ignored bad PDB record found on line 1561 warning: Ignored bad PDB record found on line 1562 warning: Ignored bad PDB record found on line 1563 warning: Ignored bad PDB record found on line 1564 warning: Ignored bad PDB record found on line 1565 warning: Ignored bad PDB record found on line 1566 warning: Ignored bad PDB record found on line 1567 warning: Ignored bad PDB record found on line 1568 warning: Ignored bad PDB record found on line 1569 warning: Ignored bad PDB record found on line 1570 warning: Ignored bad PDB record found on line 1571 warning: Ignored bad PDB record found on line 1572 warning: Ignored bad PDB record found on line 1573 warning: Ignored bad PDB record found on line 1574 warning: Ignored bad PDB record found on line 1575 warning: Ignored bad PDB record found on line 1576 warning: Ignored bad PDB record found on line 1577 warning: Ignored bad PDB record found on line 1578 warning: Ignored bad PDB record found on line 1579 warning: Ignored bad PDB record found on line 1580 warning: Ignored bad PDB record found on line 1581 warning: Ignored bad PDB record found on line 1582 warning: Ignored bad PDB record found on line 1583 warning: Ignored bad PDB record found on line 1584 warning: Ignored bad PDB record found on line 1585 warning: Ignored bad PDB record found on line 1586 warning: Ignored bad PDB record found on line 1587 warning: Ignored bad PDB record found on line 1588 warning: Ignored bad PDB record found on line 1589 warning: Ignored bad PDB record found on line 1590 warning: Ignored bad PDB record found on line 1591 Model 7 (Streptomyces violaceoruber.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Struthio camelus.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 242 warning: Ignored bad PDB record found on line 243 warning: Ignored bad PDB record found on line 244 warning: Ignored bad PDB record found on line 245 warning: Ignored bad PDB record found on line 246 warning: Ignored bad PDB record found on line 247 warning: Ignored bad PDB record found on line 248 warning: Ignored bad PDB record found on line 249 warning: Ignored bad PDB record found on line 250 warning: Ignored bad PDB record found on line 251 warning: Ignored bad PDB record found on line 252 warning: Ignored bad PDB record found on line 253 warning: Ignored bad PDB record found on line 254 warning: Ignored bad PDB record found on line 255 warning: Ignored bad PDB record found on line 256 warning: Ignored bad PDB record found on line 257 warning: Ignored bad PDB record found on line 258 warning: Ignored bad PDB record found on line 259 warning: Ignored bad PDB record found on line 260 warning: Ignored bad PDB record found on line 261 warning: Ignored bad PDB record found on line 262 warning: Ignored bad PDB record found on line 263 warning: Ignored bad PDB record found on line 264 warning: Ignored bad PDB record found on line 265 warning: Ignored bad PDB record found on line 266 warning: Ignored bad PDB record found on line 267 Model 8 (Struthio camelus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Trichoderma koningii.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 4 warning: Ignored bad PDB record found on line 5628 warning: Ignored bad PDB record found on line 5629 warning: Ignored bad PDB record found on line 5630 warning: Ignored bad PDB record found on line 5631 warning: Ignored bad PDB record found on line 5632 warning: Ignored bad PDB record found on line 5633 warning: Ignored bad PDB record found on line 5634 warning: Ignored bad PDB record found on line 5635 warning: Ignored bad PDB record found on line 5636 warning: Ignored bad PDB record found on line 5637 warning: Ignored bad PDB record found on line 5638 warning: Ignored bad PDB record found on line 5639 warning: Ignored bad PDB record found on line 5640 warning: Ignored bad PDB record found on line 5641 warning: Ignored bad PDB record found on line 5642 warning: Ignored bad PDB record found on line 5643 warning: Ignored bad PDB record found on line 5644 warning: Ignored bad PDB record found on line 5645 warning: Ignored bad PDB record found on line 5646 warning: Ignored bad PDB record found on line 5647 warning: Ignored bad PDB record found on line 5648 warning: Ignored bad PDB record found on line 5649 warning: Ignored bad PDB record found on line 5650 warning: Ignored bad PDB record found on line 5651 warning: Ignored bad PDB record found on line 5652 warning: Ignored bad PDB record found on line 5653 warning: Ignored bad PDB record found on line 5654 warning: Ignored bad PDB record found on line 5655 warning: Ignored bad PDB record found on line 5656 warning: Ignored bad PDB record found on line 5657 warning: Ignored bad PDB record found on line 5658 warning: Ignored bad PDB record found on line 5659 warning: Ignored bad PDB record found on line 5660 warning: Ignored bad PDB record found on line 5661 warning: Ignored bad PDB record found on line 5662 warning: Ignored bad PDB record found on line 5663 warning: Ignored bad PDB record found on line 5664 warning: Ignored bad PDB record found on line 5665 warning: Ignored bad PDB record found on line 5666 warning: Ignored bad PDB record found on line 5667 warning: Ignored bad PDB record found on line 5668 warning: Ignored bad PDB record found on line 5669 warning: Ignored bad PDB record found on line 5670 warning: Ignored bad PDB record found on line 5671 warning: Ignored bad PDB record found on line 5672 warning: Ignored bad PDB record found on line 5673 warning: Ignored bad PDB record found on line 5674 warning: Ignored bad PDB record found on line 5675 warning: Ignored bad PDB record found on line 5676 warning: Ignored bad PDB record found on line 5677 warning: Ignored bad PDB record found on line 5678 warning: Ignored bad PDB record found on line 5679 warning: Ignored bad PDB record found on line 5680 warning: Ignored bad PDB record found on line 5681 warning: Ignored bad PDB record found on line 5682 warning: Ignored bad PDB record found on line 5683 warning: Ignored bad PDB record found on line 5684 warning: Ignored bad PDB record found on line 5685 warning: Ignored bad PDB record found on line 5686 warning: Ignored bad PDB record found on line 5687 warning: Ignored bad PDB record found on line 5688 warning: Ignored bad PDB record found on line 5689 warning: Ignored bad PDB record found on line 5690 warning: Ignored bad PDB record found on line 5691 warning: Ignored bad PDB record found on line 5692 warning: Ignored bad PDB record found on line 5693 warning: Ignored bad PDB record found on line 5694 warning: Ignored bad PDB record found on line 5695 warning: Ignored bad PDB record found on line 5696 warning: Ignored bad PDB record found on line 5697 warning: Ignored bad PDB record found on line 5698 warning: Ignored bad PDB record found on line 5699 warning: Ignored bad PDB record found on line 5700 warning: Ignored bad PDB record found on line 5701 warning: Ignored bad PDB record found on line 5702 warning: Ignored bad PDB record found on line 5703 warning: Ignored bad PDB record found on line 5704 warning: Ignored bad PDB record found on line 5705 warning: Ignored bad PDB record found on line 5706 warning: Ignored bad PDB record found on line 5707 warning: Ignored bad PDB record found on line 5708 warning: Ignored bad PDB record found on line 5709 warning: Ignored bad PDB record found on line 5710 warning: Ignored bad PDB record found on line 5711 warning: Ignored bad PDB record found on line 5712 warning: Ignored bad PDB record found on line 5713 warning: Ignored bad PDB record found on line 5714 warning: Ignored bad PDB record found on line 5715 warning: Ignored bad PDB record found on line 5716 warning: Ignored bad PDB record found on line 5717 warning: Ignored bad PDB record found on line 5718 warning: Ignored bad PDB record found on line 5719 warning: Ignored bad PDB record found on line 5720 warning: Ignored bad PDB record found on line 5721 warning: Ignored bad PDB record found on line 5722 warning: Ignored bad PDB record found on line 5723 warning: Ignored bad PDB record found on line 5724 warning: Ignored bad PDB record found on line 5725 warning: Ignored bad PDB record found on line 5726 warning: Ignored bad PDB record found on line 5727 warning: Ignored bad PDB record found on line 5728 warning: Ignored bad PDB record found on line 5729 warning: Ignored bad PDB record found on line 5730 warning: Ignored bad PDB record found on line 5731 warning: Ignored bad PDB record found on line 5732 warning: Ignored bad PDB record found on line 5733 warning: Ignored bad PDB record found on line 5734 warning: Ignored bad PDB record found on line 5735 warning: Ignored bad PDB record found on line 5736 warning: Ignored bad PDB record found on line 5737 warning: Ignored bad PDB record found on line 5738 warning: Ignored bad PDB record found on line 5739 warning: Ignored bad PDB record found on line 5740 warning: Ignored bad PDB record found on line 5741 warning: Ignored bad PDB record found on line 5742 warning: Ignored bad PDB record found on line 5743 warning: Ignored bad PDB record found on line 5744 warning: Ignored bad PDB record found on line 5745 warning: Ignored bad PDB record found on line 5746 warning: Ignored bad PDB record found on line 5747 warning: Ignored bad PDB record found on line 5748 warning: Ignored bad PDB record found on line 5749 warning: Ignored bad PDB record found on line 5750 warning: Ignored bad PDB record found on line 5751 warning: Ignored bad PDB record found on line 5752 warning: Ignored bad PDB record found on line 5753 warning: Ignored bad PDB record found on line 5754 warning: Ignored bad PDB record found on line 5755 warning: Ignored bad PDB record found on line 5756 warning: Ignored bad PDB record found on line 5757 warning: Ignored bad PDB record found on line 5758 warning: Ignored bad PDB record found on line 5759 warning: Ignored bad PDB record found on line 5760 warning: Ignored bad PDB record found on line 5761 warning: Ignored bad PDB record found on line 5762 warning: Ignored bad PDB record found on line 5763 warning: Ignored bad PDB record found on line 5764 warning: Ignored bad PDB record found on line 5765 warning: Ignored bad PDB record found on line 5766 warning: Ignored bad PDB record found on line 5767 warning: Ignored bad PDB record found on line 5768 warning: Ignored bad PDB record found on line 5769 warning: Ignored bad PDB record found on line 5770 warning: Ignored bad PDB record found on line 5771 warning: Ignored bad PDB record found on line 5772 warning: Ignored bad PDB record found on line 5773 warning: Ignored bad PDB record found on line 5774 warning: Ignored bad PDB record found on line 5775 warning: Ignored bad PDB record found on line 5776 warning: Ignored bad PDB record found on line 5777 warning: Ignored bad PDB record found on line 5778 warning: Ignored bad PDB record found on line 5779 warning: Ignored bad PDB record found on line 5780 warning: Ignored bad PDB record found on line 5781 warning: Ignored bad PDB record found on line 5782 warning: Ignored bad PDB record found on line 5783 warning: Ignored bad PDB record found on line 5784 warning: Ignored bad PDB record found on line 5785 warning: Ignored bad PDB record found on line 5786 warning: Ignored bad PDB record found on line 5787 warning: Ignored bad PDB record found on line 5788 warning: Ignored bad PDB record found on line 5789 warning: Ignored bad PDB record found on line 5790 warning: Ignored bad PDB record found on line 5791 warning: Ignored bad PDB record found on line 5792 warning: Ignored bad PDB record found on line 5793 warning: Ignored bad PDB record found on line 5794 warning: Ignored bad PDB record found on line 5795 warning: Ignored bad PDB record found on line 5796 warning: Ignored bad PDB record found on line 5797 warning: Ignored bad PDB record found on line 5798 warning: Ignored bad PDB record found on line 5799 warning: Ignored bad PDB record found on line 5800 warning: Ignored bad PDB record found on line 5801 warning: Ignored bad PDB record found on line 5802 warning: Ignored bad PDB record found on line 5803 warning: Ignored bad PDB record found on line 5804 warning: Ignored bad PDB record found on line 5805 warning: Ignored bad PDB record found on line 5806 warning: Ignored bad PDB record found on line 5807 warning: Ignored bad PDB record found on line 5808 warning: Ignored bad PDB record found on line 5809 warning: Ignored bad PDB record found on line 5810 warning: Ignored bad PDB record found on line 5811 warning: Ignored bad PDB record found on line 5812 warning: Ignored bad PDB record found on line 5813 warning: Ignored bad PDB record found on line 5814 warning: Ignored bad PDB record found on line 5815 warning: Ignored bad PDB record found on line 5816 warning: Ignored bad PDB record found on line 5817 warning: Ignored bad PDB record found on line 5818 warning: Ignored bad PDB record found on line 5819 warning: Ignored bad PDB record found on line 5820 warning: Ignored bad PDB record found on line 5821 warning: Ignored bad PDB record found on line 5822 warning: Ignored bad PDB record found on line 5823 warning: Ignored bad PDB record found on line 5824 warning: Ignored bad PDB record found on line 5825 warning: Ignored bad PDB record found on line 5826 warning: Ignored bad PDB record found on line 5827 warning: Ignored bad PDB record found on line 5828 warning: Ignored bad PDB record found on line 5829 warning: Ignored bad PDB record found on line 5830 warning: Ignored bad PDB record found on line 5831 warning: Ignored bad PDB record found on line 5832 warning: Ignored bad PDB record found on line 5833 warning: Ignored bad PDB record found on line 5834 warning: Ignored bad PDB record found on line 5835 warning: Ignored bad PDB record found on line 5836 warning: Ignored bad PDB record found on line 5837 warning: Ignored bad PDB record found on line 5838 warning: Ignored bad PDB record found on line 5839 warning: Ignored bad PDB record found on line 5840 warning: Ignored bad PDB record found on line 5841 warning: Ignored bad PDB record found on line 5842 warning: Ignored bad PDB record found on line 5843 warning: Ignored bad PDB record found on line 5844 warning: Ignored bad PDB record found on line 5845 warning: Ignored bad PDB record found on line 5846 warning: Ignored bad PDB record found on line 5847 warning: Ignored bad PDB record found on line 5848 warning: Ignored bad PDB record found on line 5849 warning: Ignored bad PDB record found on line 5850 warning: Ignored bad PDB record found on line 5851 warning: Ignored bad PDB record found on line 5852 warning: Ignored bad PDB record found on line 5853 warning: Ignored bad PDB record found on line 5854 warning: Ignored bad PDB record found on line 5855 warning: Ignored bad PDB record found on line 5856 warning: Ignored bad PDB record found on line 5857 warning: Ignored bad PDB record found on line 5858 warning: Ignored bad PDB record found on line 5859 warning: Ignored bad PDB record found on line 5860 warning: Ignored bad PDB record found on line 5861 warning: Ignored bad PDB record found on line 5862 warning: Ignored bad PDB record found on line 5863 warning: Ignored bad PDB record found on line 5864 warning: Ignored bad PDB record found on line 5865 warning: Ignored bad PDB record found on line 5866 warning: Ignored bad PDB record found on line 5867 warning: Ignored bad PDB record found on line 5868 warning: Ignored bad PDB record found on line 5869 warning: Ignored bad PDB record found on line 5870 warning: Ignored bad PDB record found on line 5871 warning: Ignored bad PDB record found on line 5872 warning: Ignored bad PDB record found on line 5873 Model 9 (Trichoderma koningii.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Zea mayS.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 4 warning: Ignored bad PDB record found on line 1581 warning: Ignored bad PDB record found on line 1582 warning: Ignored bad PDB record found on line 1583 warning: Ignored bad PDB record found on line 1584 warning: Ignored bad PDB record found on line 1585 warning: Ignored bad PDB record found on line 1586 warning: Ignored bad PDB record found on line 1587 warning: Ignored bad PDB record found on line 1588 warning: Ignored bad PDB record found on line 1589 warning: Ignored bad PDB record found on line 1590 warning: Ignored bad PDB record found on line 1591 warning: Ignored bad PDB record found on line 1592 warning: Ignored bad PDB record found on line 1593 warning: Ignored bad PDB record found on line 1594 warning: Ignored bad PDB record found on line 1595 warning: Ignored bad PDB record found on line 1596 warning: Ignored bad PDB record found on line 1597 warning: Ignored bad PDB record found on line 1598 warning: Ignored bad PDB record found on line 1599 warning: Ignored bad PDB record found on line 1600 warning: Ignored bad PDB record found on line 1601 warning: Ignored bad PDB record found on line 1602 warning: Ignored bad PDB record found on line 1603 warning: Ignored bad PDB record found on line 1604 warning: Ignored bad PDB record found on line 1605 warning: Ignored bad PDB record found on line 1606 warning: Ignored bad PDB record found on line 1607 warning: Ignored bad PDB record found on line 1608 warning: Ignored bad PDB record found on line 1609 warning: Ignored bad PDB record found on line 1610 warning: Ignored bad PDB record found on line 1611 warning: Ignored bad PDB record found on line 1612 warning: Ignored bad PDB record found on line 1613 warning: Ignored bad PDB record found on line 1614 warning: Ignored bad PDB record found on line 1615 warning: Ignored bad PDB record found on line 1616 warning: Ignored bad PDB record found on line 1617 warning: Ignored bad PDB record found on line 1618 warning: Ignored bad PDB record found on line 1619 warning: Ignored bad PDB record found on line 1620 warning: Ignored bad PDB record found on line 1621 warning: Ignored bad PDB record found on line 1622 warning: Ignored bad PDB record found on line 1623 warning: Ignored bad PDB record found on line 1624 warning: Ignored bad PDB record found on line 1625 warning: Ignored bad PDB record found on line 1626 warning: Ignored bad PDB record found on line 1627 warning: Ignored bad PDB record found on line 1628 warning: Ignored bad PDB record found on line 1629 warning: Ignored bad PDB record found on line 1630 warning: Ignored bad PDB record found on line 1631 warning: Ignored bad PDB record found on line 1632 warning: Ignored bad PDB record found on line 1633 warning: Ignored bad PDB record found on line 1634 warning: Ignored bad PDB record found on line 1635 warning: Ignored bad PDB record found on line 1636 warning: Ignored bad PDB record found on line 1637 warning: Ignored bad PDB record found on line 1638 warning: Ignored bad PDB record found on line 1639 warning: Ignored bad PDB record found on line 1640 warning: Ignored bad PDB record found on line 1641 warning: Ignored bad PDB record found on line 1642 warning: Ignored bad PDB record found on line 1643 warning: Ignored bad PDB record found on line 1644 warning: Ignored bad PDB record found on line 1645 warning: Ignored bad PDB record found on line 1646 warning: Ignored bad PDB record found on line 1647 warning: Ignored bad PDB record found on line 1648 warning: Ignored bad PDB record found on line 1649 warning: Ignored bad PDB record found on line 1650 warning: Ignored bad PDB record found on line 1651 warning: Ignored bad PDB record found on line 1652 warning: Ignored bad PDB record found on line 1653 warning: Ignored bad PDB record found on line 1654 warning: Ignored bad PDB record found on line 1655 warning: Ignored bad PDB record found on line 1656 warning: Ignored bad PDB record found on line 1657 warning: Ignored bad PDB record found on line 1658 warning: Ignored bad PDB record found on line 1659 warning: Ignored bad PDB record found on line 1660 warning: Ignored bad PDB record found on line 1661 warning: Ignored bad PDB record found on line 1662 warning: Ignored bad PDB record found on line 1663 warning: Ignored bad PDB record found on line 1664 Model 10 (Zea mayS.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. Model 11 (Bitis gabonica.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. Model 12 (Bothrops jararaca.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. Model 13 (Cerrophidion godmani.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. Model 14 (Echis carinatus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Micrurus corallinus.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 1436 warning: Ignored bad PDB record found on line 1437 warning: Ignored bad PDB record found on line 1438 warning: Ignored bad PDB record found on line 1439 warning: Ignored bad PDB record found on line 1440 warning: Ignored bad PDB record found on line 1441 warning: Ignored bad PDB record found on line 1442 warning: Ignored bad PDB record found on line 1443 warning: Ignored bad PDB record found on line 1444 warning: Ignored bad PDB record found on line 1445 warning: Ignored bad PDB record found on line 1446 warning: Ignored bad PDB record found on line 1447 warning: Ignored bad PDB record found on line 1448 warning: Ignored bad PDB record found on line 1449 warning: Ignored bad PDB record found on line 1450 warning: Ignored bad PDB record found on line 1451 warning: Ignored bad PDB record found on line 1452 warning: Ignored bad PDB record found on line 1453 warning: Ignored bad PDB record found on line 1454 warning: Ignored bad PDB record found on line 1455 warning: Ignored bad PDB record found on line 1456 warning: Ignored bad PDB record found on line 1457 warning: Ignored bad PDB record found on line 1458 warning: Ignored bad PDB record found on line 1459 warning: Ignored bad PDB record found on line 1460 warning: Ignored bad PDB record found on line 1461 warning: Ignored bad PDB record found on line 1462 warning: Ignored bad PDB record found on line 1463 warning: Ignored bad PDB record found on line 1464 warning: Ignored bad PDB record found on line 1465 warning: Ignored bad PDB record found on line 1466 warning: Ignored bad PDB record found on line 1467 warning: Ignored bad PDB record found on line 1468 warning: Ignored bad PDB record found on line 1469 warning: Ignored bad PDB record found on line 1470 warning: Ignored bad PDB record found on line 1471 warning: Ignored bad PDB record found on line 1472 warning: Ignored bad PDB record found on line 1473 warning: Ignored bad PDB record found on line 1474 warning: Ignored bad PDB record found on line 1475 warning: Ignored bad PDB record found on line 1476 warning: Ignored bad PDB record found on line 1477 warning: Ignored bad PDB record found on line 1478 warning: Ignored bad PDB record found on line 1479 warning: Ignored bad PDB record found on line 1480 warning: Ignored bad PDB record found on line 1481 warning: Ignored bad PDB record found on line 1482 warning: Ignored bad PDB record found on line 1483 warning: Ignored bad PDB record found on line 1484 warning: Ignored bad PDB record found on line 1485 warning: Ignored bad PDB record found on line 1486 warning: Ignored bad PDB record found on line 1487 warning: Ignored bad PDB record found on line 1488 warning: Ignored bad PDB record found on line 1489 warning: Ignored bad PDB record found on line 1490 warning: Ignored bad PDB record found on line 1491 warning: Ignored bad PDB record found on line 1492 warning: Ignored bad PDB record found on line 1493 warning: Ignored bad PDB record found on line 1494 warning: Ignored bad PDB record found on line 1495 warning: Ignored bad PDB record found on line 1496 warning: Ignored bad PDB record found on line 1497 warning: Ignored bad PDB record found on line 1498 warning: Ignored bad PDB record found on line 1499 warning: Ignored bad PDB record found on line 1500 warning: Ignored bad PDB record found on line 1501 warning: Ignored bad PDB record found on line 1502 warning: Ignored bad PDB record found on line 1503 warning: Ignored bad PDB record found on line 1504 warning: Ignored bad PDB record found on line 1505 warning: Ignored bad PDB record found on line 1506 warning: Ignored bad PDB record found on line 1507 warning: Ignored bad PDB record found on line 1508 warning: Ignored bad PDB record found on line 1509 warning: Ignored bad PDB record found on line 1510 Model 15 (Micrurus corallinus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Notechis scutatus scutatus.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 1419 warning: Ignored bad PDB record found on line 1420 warning: Ignored bad PDB record found on line 1421 warning: Ignored bad PDB record found on line 1422 warning: Ignored bad PDB record found on line 1423 warning: Ignored bad PDB record found on line 1424 warning: Ignored bad PDB record found on line 1425 warning: Ignored bad PDB record found on line 1426 warning: Ignored bad PDB record found on line 1427 warning: Ignored bad PDB record found on line 1428 warning: Ignored bad PDB record found on line 1429 warning: Ignored bad PDB record found on line 1430 warning: Ignored bad PDB record found on line 1431 warning: Ignored bad PDB record found on line 1432 warning: Ignored bad PDB record found on line 1433 warning: Ignored bad PDB record found on line 1434 warning: Ignored bad PDB record found on line 1435 warning: Ignored bad PDB record found on line 1436 warning: Ignored bad PDB record found on line 1437 warning: Ignored bad PDB record found on line 1438 warning: Ignored bad PDB record found on line 1439 warning: Ignored bad PDB record found on line 1440 warning: Ignored bad PDB record found on line 1441 warning: Ignored bad PDB record found on line 1442 warning: Ignored bad PDB record found on line 1443 warning: Ignored bad PDB record found on line 1444 warning: Ignored bad PDB record found on line 1445 warning: Ignored bad PDB record found on line 1446 warning: Ignored bad PDB record found on line 1447 warning: Ignored bad PDB record found on line 1448 warning: Ignored bad PDB record found on line 1449 warning: Ignored bad PDB record found on line 1450 warning: Ignored bad PDB record found on line 1451 warning: Ignored bad PDB record found on line 1452 warning: Ignored bad PDB record found on line 1453 warning: Ignored bad PDB record found on line 1454 warning: Ignored bad PDB record found on line 1455 warning: Ignored bad PDB record found on line 1456 warning: Ignored bad PDB record found on line 1457 warning: Ignored bad PDB record found on line 1458 warning: Ignored bad PDB record found on line 1459 warning: Ignored bad PDB record found on line 1460 warning: Ignored bad PDB record found on line 1461 warning: Ignored bad PDB record found on line 1462 warning: Ignored bad PDB record found on line 1463 warning: Ignored bad PDB record found on line 1464 warning: Ignored bad PDB record found on line 1465 warning: Ignored bad PDB record found on line 1466 warning: Ignored bad PDB record found on line 1467 warning: Ignored bad PDB record found on line 1468 warning: Ignored bad PDB record found on line 1469 warning: Ignored bad PDB record found on line 1470 warning: Ignored bad PDB record found on line 1471 warning: Ignored bad PDB record found on line 1472 warning: Ignored bad PDB record found on line 1473 warning: Ignored bad PDB record found on line 1474 warning: Ignored bad PDB record found on line 1475 warning: Ignored bad PDB record found on line 1476 warning: Ignored bad PDB record found on line 1477 warning: Ignored bad PDB record found on line 1478 warning: Ignored bad PDB record found on line 1479 warning: Ignored bad PDB record found on line 1480 warning: Ignored bad PDB record found on line 1481 warning: Ignored bad PDB record found on line 1482 warning: Ignored bad PDB record found on line 1483 warning: Ignored bad PDB record found on line 1484 warning: Ignored bad PDB record found on line 1485 warning: Ignored bad PDB record found on line 1486 warning: Ignored bad PDB record found on line 1487 warning: Ignored bad PDB record found on line 1488 warning: Ignored bad PDB record found on line 1489 warning: Ignored bad PDB record found on line 1490 warning: Ignored bad PDB record found on line 1491 warning: Ignored bad PDB record found on line 1492 warning: Ignored bad PDB record found on line 1493 Model 17 (Notechis scutatus scutatus.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Ophiophagus hannah.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 1459 warning: Ignored bad PDB record found on line 1460 warning: Ignored bad PDB record found on line 1461 warning: Ignored bad PDB record found on line 1462 warning: Ignored bad PDB record found on line 1463 warning: Ignored bad PDB record found on line 1464 warning: Ignored bad PDB record found on line 1465 warning: Ignored bad PDB record found on line 1466 warning: Ignored bad PDB record found on line 1467 warning: Ignored bad PDB record found on line 1468 warning: Ignored bad PDB record found on line 1469 warning: Ignored bad PDB record found on line 1470 warning: Ignored bad PDB record found on line 1471 warning: Ignored bad PDB record found on line 1472 warning: Ignored bad PDB record found on line 1473 warning: Ignored bad PDB record found on line 1474 warning: Ignored bad PDB record found on line 1475 warning: Ignored bad PDB record found on line 1476 warning: Ignored bad PDB record found on line 1477 warning: Ignored bad PDB record found on line 1478 warning: Ignored bad PDB record found on line 1479 warning: Ignored bad PDB record found on line 1480 warning: Ignored bad PDB record found on line 1481 warning: Ignored bad PDB record found on line 1482 warning: Ignored bad PDB record found on line 1483 warning: Ignored bad PDB record found on line 1484 warning: Ignored bad PDB record found on line 1485 warning: Ignored bad PDB record found on line 1486 warning: Ignored bad PDB record found on line 1487 warning: Ignored bad PDB record found on line 1488 warning: Ignored bad PDB record found on line 1489 warning: Ignored bad PDB record found on line 1490 warning: Ignored bad PDB record found on line 1491 warning: Ignored bad PDB record found on line 1492 warning: Ignored bad PDB record found on line 1493 warning: Ignored bad PDB record found on line 1494 warning: Ignored bad PDB record found on line 1495 warning: Ignored bad PDB record found on line 1496 warning: Ignored bad PDB record found on line 1497 warning: Ignored bad PDB record found on line 1498 warning: Ignored bad PDB record found on line 1499 warning: Ignored bad PDB record found on line 1500 warning: Ignored bad PDB record found on line 1501 warning: Ignored bad PDB record found on line 1502 warning: Ignored bad PDB record found on line 1503 warning: Ignored bad PDB record found on line 1504 warning: Ignored bad PDB record found on line 1505 warning: Ignored bad PDB record found on line 1506 warning: Ignored bad PDB record found on line 1507 warning: Ignored bad PDB record found on line 1508 warning: Ignored bad PDB record found on line 1509 warning: Ignored bad PDB record found on line 1510 warning: Ignored bad PDB record found on line 1511 warning: Ignored bad PDB record found on line 1512 warning: Ignored bad PDB record found on line 1513 warning: Ignored bad PDB record found on line 1514 warning: Ignored bad PDB record found on line 1515 warning: Ignored bad PDB record found on line 1516 warning: Ignored bad PDB record found on line 1517 warning: Ignored bad PDB record found on line 1518 warning: Ignored bad PDB record found on line 1519 warning: Ignored bad PDB record found on line 1520 warning: Ignored bad PDB record found on line 1521 warning: Ignored bad PDB record found on line 1522 warning: Ignored bad PDB record found on line 1523 warning: Ignored bad PDB record found on line 1524 warning: Ignored bad PDB record found on line 1525 warning: Ignored bad PDB record found on line 1526 warning: Ignored bad PDB record found on line 1527 warning: Ignored bad PDB record found on line 1528 warning: Ignored bad PDB record found on line 1529 warning: Ignored bad PDB record found on line 1530 warning: Ignored bad PDB record found on line 1531 warning: Ignored bad PDB record found on line 1532 warning: Ignored bad PDB record found on line 1533 warning: Ignored bad PDB record found on line 1534 warning: Ignored bad PDB record found on line 1535 warning: Ignored bad PDB record found on line 1536 Model 18 (Ophiophagus hannah.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. The following problems occurred while reading PDB file for Trimeresurus elegans.pdb warning: Ignored bad PDB record found on line 1 warning: Ignored bad PDB record found on line 2 warning: Ignored bad PDB record found on line 1381 warning: Ignored bad PDB record found on line 1382 warning: Ignored bad PDB record found on line 1383 warning: Ignored bad PDB record found on line 1384 warning: Ignored bad PDB record found on line 1385 warning: Ignored bad PDB record found on line 1386 warning: Ignored bad PDB record found on line 1387 warning: Ignored bad PDB record found on line 1388 warning: Ignored bad PDB record found on line 1389 warning: Ignored bad PDB record found on line 1390 warning: Ignored bad PDB record found on line 1391 warning: Ignored bad PDB record found on line 1392 warning: Ignored bad PDB record found on line 1393 warning: Ignored bad PDB record found on line 1394 warning: Ignored bad PDB record found on line 1395 warning: Ignored bad PDB record found on line 1396 warning: Ignored bad PDB record found on line 1397 warning: Ignored bad PDB record found on line 1398 warning: Ignored bad PDB record found on line 1399 warning: Ignored bad PDB record found on line 1400 warning: Ignored bad PDB record found on line 1401 warning: Ignored bad PDB record found on line 1402 warning: Ignored bad PDB record found on line 1403 warning: Ignored bad PDB record found on line 1404 warning: Ignored bad PDB record found on line 1405 warning: Ignored bad PDB record found on line 1406 warning: Ignored bad PDB record found on line 1407 warning: Ignored bad PDB record found on line 1408 warning: Ignored bad PDB record found on line 1409 warning: Ignored bad PDB record found on line 1410 warning: Ignored bad PDB record found on line 1411 warning: Ignored bad PDB record found on line 1412 warning: Ignored bad PDB record found on line 1413 warning: Ignored bad PDB record found on line 1414 warning: Ignored bad PDB record found on line 1415 warning: Ignored bad PDB record found on line 1416 warning: Ignored bad PDB record found on line 1417 warning: Ignored bad PDB record found on line 1418 warning: Ignored bad PDB record found on line 1419 warning: Ignored bad PDB record found on line 1420 warning: Ignored bad PDB record found on line 1421 warning: Ignored bad PDB record found on line 1422 warning: Ignored bad PDB record found on line 1423 warning: Ignored bad PDB record found on line 1424 warning: Ignored bad PDB record found on line 1425 warning: Ignored bad PDB record found on line 1426 warning: Ignored bad PDB record found on line 1427 warning: Ignored bad PDB record found on line 1428 warning: Ignored bad PDB record found on line 1429 warning: Ignored bad PDB record found on line 1430 warning: Ignored bad PDB record found on line 1431 warning: Ignored bad PDB record found on line 1432 warning: Ignored bad PDB record found on line 1433 warning: Ignored bad PDB record found on line 1434 warning: Ignored bad PDB record found on line 1435 warning: Ignored bad PDB record found on line 1436 warning: Ignored bad PDB record found on line 1437 warning: Ignored bad PDB record found on line 1438 warning: Ignored bad PDB record found on line 1439 warning: Ignored bad PDB record found on line 1440 warning: Ignored bad PDB record found on line 1441 warning: Ignored bad PDB record found on line 1442 warning: Ignored bad PDB record found on line 1443 warning: Ignored bad PDB record found on line 1444 warning: Ignored bad PDB record found on line 1445 warning: Ignored bad PDB record found on line 1446 warning: Ignored bad PDB record found on line 1447 warning: Ignored bad PDB record found on line 1448 warning: Ignored bad PDB record found on line 1449 warning: Ignored bad PDB record found on line 1450 warning: Ignored bad PDB record found on line 1451 Model 19 (Trimeresurus elegans.pdb) appears to be a protein without secondary structure assignments. Automatically computing assignments using 'ksdssp' and parameter values: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Use command 'help ksdssp' for more information. Match?Align cutoff: 5.0, in column if within cutoff of: any Cannot generate alignment with Bitis gabonica.pdb principal chain because it is not superimposed on the other structures Match?Align cutoff: 5.0, in column if within cutoff of: any Cannot generate alignment with Bitis gabonica.pdb principal chain because it is not superimposed on the other structures Computing secondary structure assignments for model(s) #11, #0 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #1 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #2 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #3 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #4 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #5 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #6 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #7 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #8 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #9 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #10 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #12 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #13 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #14 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #15 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #16 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #17 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #18 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 Computing secondary structure assignments for model(s) #19 using ksdssp (Kabsch and Sander Define Secondary Structure of Proteins) with the parameters: energy cutoff -0.5 minimum helix length 3 minimum strand length 3 match Bitis gabonica.pdb (#11) with Homo sapiens.pdb, chain A (#3), score = 399.8 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 85 atom pairs is 0.998 angstroms match Bitis gabonica.pdb (#11) with Streptomyces violaceoruber.pdb (#7), score = 98.2 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 9 atom pairs is 1.646 angstroms match Bitis gabonica.pdb (#11) with Bothrops jararaca.pdb (#12), score = 545 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 89 atom pairs is 0.850 angstroms match Bitis gabonica.pdb (#11) with Mirabilis jalapa.pdb (#5), score = 158.8 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 35 atom pairs is 0.530 angstroms match Bitis gabonica.pdb (#11) with Schizosaccharomyces japonicus.pdb, chain A (#6), score = 102.9 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 8 atom pairs is 1.453 angstroms match Bitis gabonica.pdb (#11) with Micrurus corallinus.pdb (#15), score = 394.3 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 93 atom pairs is 0.782 angstroms match Bitis gabonica.pdb (#11) with Zea mayS.pdb, chain A (#10), score = 178.8 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 22 atom pairs is 0.426 angstroms match Bitis gabonica.pdb (#11) with Trichoderma koningii.pdb, chain A (#9), score = 75.5 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 4 atom pairs is 1.272 angstroms match Bitis gabonica.pdb (#11) with Struthio camelus.pdb (#8), score = 41.8 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 13 atom pairs is 1.051 angstroms match Bitis gabonica.pdb (#11) with Culex quinquefasciatus.pdb, chain A (#1), score = 162.7 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 27 atom pairs is 0.536 angstroms match Bitis gabonica.pdb (#11) with Ophiophagus hannah.pdb (#18), score = 408.9 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 89 atom pairs is 0.747 angstroms match Bitis gabonica.pdb (#11) with Trimeresurus elegans.pdb (#19), score = 518.4 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 96 atom pairs is 0.832 angstroms match Bitis gabonica.pdb (#11) with Asterina pectinifera-YET.pdb, chain A (#0), score = 409.3 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 86 atom pairs is 0.909 angstroms match Bitis gabonica.pdb (#11) with Echis carinatus.pdb (#14), score = 519.9 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 102 atom pairs is 0.792 angstroms match Bitis gabonica.pdb (#11) with Notechis scutatus scutatus.pdb (#17), score = 424.4 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 84 atom pairs is 0.750 angstroms match Bitis gabonica.pdb (#11) with Mesobuthus tamulus.pdb, chain A (#4), score = 182.4 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 32 atom pairs is 0.688 angstroms match Bitis gabonica.pdb (#11) with Naja naja.pdb, chain A (#16), score = 463.6 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 89 atom pairs is 0.710 angstroms match Bitis gabonica.pdb (#11) with Cerrophidion godmani.pdb (#13), score = 535.2 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 100 atom pairs is 0.633 angstroms match Bitis gabonica.pdb (#11) with Heloderma horridum horridum.pdb (#2), score = 101 with these parameters: chain pairing: bb Needleman-Wunsch using BLOSUM-30 ss fraction: 0.3 gap open (HH/SS/other) 18/18/6, extend 1 ss matrix: (O, S): -6 (H, O): -6 (H, H): 6 (S, S): 6 (H, S): -9 (O, O): 4 iteration cutoff: 2 RMSD between 19 atom pairs is 0.784 angstroms Match?Align cutoff: 5.0, in column if within cutoff of: any 0 fully populated columns