Hi Oliver,
One more step you probably want when showing clip plane positions in a side view is to use orthographic projection (command “set projection orthographic”, then to get back “set projection perspective”). The Chimera side view dialog uses orthographic projection. This makes the image projected exactly perpendicular to the screen so that the clip line really is the dividing line between what is and what is not clipped.
I’m curious what kind of image you will composite from the two side images, one with per-model clip planes and one without clip planes. Will you fade out the clipped away part (the unclipped image) then overlay the two? Then draw in clip lines in a paint program? In Chimera I think it would be pretty easy to make a shortcut that replaces near/far clip planes with per-model clip planes, adds two rectangular slabs, animates a rotation by 90 degees to show an edge on view, then unclips so you can see the models outside the clip planes, with rectangular slabs now viewed edge-on to show the boundary between clipped and unclipped. Then the same shortcut could reverse all those steps to get you back to the original view. In ChimeraX we could be even fancier and have the part outside the clip planes be faded.
Tom
On Apr 27, 2016, at 10:25 AM, Oliver Clarke wrote:
Hi Elaine, actually this works pretty well, thanks! Because if you supply # to mclip it will clip all models, so that makes it easier than I had been thinking:
mclip # match nearfar
turn y 90
adjust clip planes
take image1
~mclip
take image2
then image1 and image2 can be overlayed in illustrator or equivalent to generate the kind of image I want. Thanks for the tip!
Cheers,
Oli.
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