Something that often comes up is that I have some number of aligned protein structures with nicely color coded  secondary features and specific side chains. I then want to fit another molecule in this same space and apply a "preset" graphic mode to the new structure without undoing the previous molecular views. 

I expect this is possible, but I haven't gotten it to work yet. I've tried making only my molecule of interest "active" in the Model Panel, but  the preset still effects everything. 

I'm using Alpha build 2557 2008/09/13 at the moment. 

Thanks,

Jim 
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James Nettles, Ph. D.  Assistant Professor 
Department of Pediatrics, Emory University School of Medicine
Laboratory of Biochemical Pharmacology (LOBP)
Computer Assisted Discovery Research Environment (CADRE)
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