Hi Kyle, There isn’t a Chimera command, sorry; I’m sure it can be done in python, but somebody else would have to advise on that. It may be a couple days, as our expert is away. However, ChimeraX has a “volume settings #N” command that reports the levels of volume model #N (among many other things) to the Log. Otherwise, it has essentially the same “volume” command options as in Chimera, including “sdLevel”. <http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 27, 2019, at 5:55 AM, Kyle Morris <kylelmorris@gmail.com> wrote:
Dear chimera users and dev,
Is there a chimera or python command that can report the current contour level of a volume that is in model number #n back to the reply log or equivalent?
I want to do this after executing 'volume #n sdLevel 3’ such that I can programmatically retrieve the contour level associated with a particular sigma level of a currently loaded volume.
Apologies if in my searching I have missed this on the boards, I think this is a novel question though. Thanks as always for your help.
Best wishes, Kyle _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users