Hello Tom,

Thanks for the answer...
It is a nice alternative. Although, it's kind of more difficult to manually translate a precise amount of nm. Is there a way, like with the "plane" option, to control precisely the width and the translation of the subregion box? Maybe through a command line, but I have found it...

Thanks again for the help,
Nicolas

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From: Tom Goddard [mailto:goddard@sonic.net]
To: Nicolas Coudray [mailto:ncoudray@nysbc.org]
Cc: chimera-users@cgl.ucsf.edu
Sent: Wed, 07 Dec 2011 19:00:01 -0500
Subject: Re: [Chimera-users] Axis vs map rotation

Hi Nicolas,

To show an oblique slice of a map you can use the volume dialog "subregion selection" panel. The "planes" panel can only display slices perpendicular to the volume axes as you found. There's a video showing how to show the oblique slice on the Chimera video tutorial web page

http://www.cgl.ucsf.edu/chimera/videodoc/slice/index.html

The Chimera volume guide has a text description of the procedure.

http://www.cgl.ucsf.edu/chimera/data/tutorials/volumetour/volumetour.html#resample

Tom

Hi,

I'm using the "Feature >> Plane" options of the "Volume viewer tool" to show contour lines in planes of density maps. For the plane, there are 3 options: "X-axis", "Y-axis", and "Z-axis". The plane I'm interested in is none of those. I try to rotate the maps, but the X, Y and Z axis are also rotating... Do you know if there's a way to rotate the "axis" and the "map" independently, please?

Thanks in advance,
Nicolas