On Dec 6, 2008, at 11:04 AM, Elaine Meng wrote:

We have talked about  
allowing multiple rotamers to be applied to the structure by giving  
them different "alternate location" ID codes, but that has not been  
implemented yet.  Also, some residues may have more rotamers than the  
number of possible alternate location ID codes.  Nevertheless we will  
make sure it is on one of our requested features lists.

This will likely get implemented in the next few months.  I'll let you know when it becomes available.

--Eric

                        Eric Pettersen
                        UCSF Computer Graphics Lab
                        http://www.cgl.ucsf.edu