Hello,

I have installed chimera in ubuntu 14.04..

I am finding difficult to get the .pdb format for diglyicne peptide (and further to create the topology and run the simulation in gromacs)...

1] If in Build Structure i select PubChem CID and type 11163 (Diglycine PubChem CID) i am getting error as:-

Error fetching 11163:[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssi.c:590)

2] I even tried through File - Fetch by ID - Pubchem and typed 1163 (Diglycine PubChem CID).. but in vain..i am getting the same error..

So can anybody kindly help....i am a novice here..

Any suggestions are highly appreciated..

Thank you...

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On Sun, Aug 20, 2017 at 11:15 PM, Dilip H N <cy16f01.dilip@nitk.edu.in> wrote:

Hello,
I have install chimers in ubuntu 14.04..
I am finding difficult to get the .pdb format for diglyicne peptide...
1] If in Build Structure i select PubChem CID and type 11163 (Diglycine PubChem CID) i am getting error as:-
Error fetching 11163:[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssi.c:590)
2] I even tried through File - Fetch by ID - Pubchem and typed 1163 (Diglycine PubChem CID).. but in vain..i am getting the same error..

So can anybody kindly help....i am a novice here..

Thank you...
--
With Best Regards,

DILIP.H.N
Ph.D Student

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With Best Regards,

DILIP.H.N

Ph.D Student