Dear Chimera Thank you for answering my question. I see. Thank you for taking your time. --------------------------------------------------------------------------- Kenji Matsui Graduate School of Tokyo University of Agriculture and Technology M2 2-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan Mail: s214903z@st.go.tuat.ac.jp 2023年1月11日(水) 5:00 Eric Pettersen <pett@cgl.ucsf.edu>:
Hi Kenji, The charge computation that Chimera carries out is actually performed by a separate program (antechamber, from AmberTools). On Windows, as antechamber executes, that black window appears and will disappear when antechamber finishes. The computation takes awhile on a molecule as big as the one you're using. On my 2015 Mac it take 87 seconds to finish. At any rate, the black window is nothing to worry about.
--Eric
Eric Pettersen UCSF Computer Graphics Lab
On Jan 9, 2023, at 6:38 PM, Kenji MATSUI via Chimera-users < chimera-users@cgl.ucsf.edu> wrote:
Dear chimera
I am sorry to interrupt your busy schedule.
My name is Matsui, and I am a second-year master's student at a Japanese university. Thank you for taking time out of your busy schedule to respond to my question the other day.
We are investigating interactions between protein and ligand.
I want to optimize the attached file compound. I want to adjust the charge for this purpose.
<image.png>
Question However, when I press OK in the first photo section, a black screen appears as in the second photo.In you tube and other videos, I was moved to the save etc. screen. Is the charge optimization done correctly here?
<image.png>
------------------------------------------------------------ --------------- Kenji Matsui Graduate School of Tokyo University of Agriculture and Technology M2 2-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan Mail: s214903z@st.go.tuat.ac.jp <OSW-1_inactive_analogue.mol2> _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users