Hi,

I have been using Chimera to visualize MO orbital on molecules from ORCA calculations. I have been able to visualize the MO orbitals as a surface volume from cube files. However, I just found out that when I try to reorient the molecule with the surface volume, they are no longer aligned. I don't know what I did to cause this. Any help is much appreciated.

Attached is the picture of the molecules before and after I tried to reorient the molecule with the surface volume.

Thank you,

Phan