Continuing my earlier question.

I tried the suggestions sent to me neither split nor surfcat seemed to work.

After some attempts I received this window and reported the bug

I then tried to use molmap and I did get a surface and saw how by moving the cursor in the molmap window I could get the surface to progressively disappear leaving the selected  domains that were colored previously. The surface was for the entire protein, one of the models #0.

I could also change the surface color.

Then I went looking at some of the tabs  on the molmap window and cannot describe the sequence, but ended up with another window that I eventually found out was for visualizing Cryo EM maps. Now I have a surface that is multicolored and looks like jelly beans.

Somehow perhaps by selecting one of the models from the command lines, (#0) I was able to pull out a surface of the entire molecule, rotate it etc, and progressively remove the surface, til the selected domains remained.

Stuck!!!

This is one model:

HERE IS ANOTHER which is #1 or #2

Arthur Szabo