Hi Kyle, Here is the fixed script avalnogui.py to report density map values at atom positions. It is also at the Chimera Python scripts web page. https://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts <https://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts> I made it take the file paths on the command line, for instance, $ chimera --nogui --silent --script "avalnogui.py 1a0m.pdb 1a0m.omap" #1:1.A@N 3.722 #1:1.A@CA 3.345 #1:1.A@C 4.04 ... Tom
On Jan 18, 2017, at 7:36 PM, Kyle Morris <kylelmorris@berkeley.edu> wrote:
Dear chimera dev and users,
Can anyone confirm with the latest chimera version (i’m running v1.11.2 build 41376) if this python script for measuring map values at atoms works for them?
The script was reported previously on the users list here: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2007-May/001587.html
For me I get a python import error: from VolumeViewer import Data_Region, full_region, Rendering_Options
Thanks for your insight!
Best wishes, Kyle _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users