Hi Marie, To save your Chimera session including the fit position use File / Save Session As.... Later you can open that session in Chimera to get back to where you were. To save an image use File / Save Image.... But if you want to save the fit coordinates so they can be used in other software then you should use File / Save PDB... and save relative to the EM map you fit into. Tom Pancera, Marie (NIH/VRC) [E] wrote:
Hello,
I am using Chimera to fit coordinates into EM density.
However I have problems when I save with Chimera as the coordinates that I am saving are not the one I see on the screen.
Here is what I do:
File
Save PDB
chose the folder
A file name
A file type
The model that I want to save, i.e the one I see on the screen
And then I have to select save relative to model, otherwise I am saving the original molecule, the problem is that I am not sure relative to which model I have to save it.
IS there an easier way to just save what I can see on the screen?
Thanks,
Marie
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