Dear Dr. Elaine, Thank you very much for prompt reply and consideration of my request. I received the all tutorial / manual which you have through link. Yours sincerely, Vivek Keshri On Tue, Jan 31, 2012 at 12:16 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Dear Vivek, In general, you could use the FindHBond and Find Clashes/Contacts tools (or their command equivalents).
< http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond...
< http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash...
For example, see this tutorial: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html>
There are several additional tutorials that may be useful for learning how to use Chimera: <http://www.cgl.ucsf.edu/Outreach/Tutorials/GettingStarted.html> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html>
Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:
Dear Sir / Madam,
I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding.
Waiting for favorable response...
Yours Sincerely,
Vivek Keshri