Hi Marco, Yes, I tried it before I sent the answer! Only the menu is missing the residue. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 16, 2022, at 9:36 AM, Marco Sette via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Hi Elaine,
select :CH6 or disp :CH6 work in Chimera as well.
Thanks a lot,
Marco
Il 16/12/2022 18:18, Elaine Meng ha scritto:
Hi Marco, Hmmm, it may be a bug that this residue does not appear in the Select... Residue menu.
However, I can see by looking in the PDB file (or by opening this structure in ChimeraX) that the nonstandard residue name is CH6, so you can
disp :CH6
for example, or do other things to it, e.g. color, select, ...
select :CH6
The residue does appear in the ChimeraX menu Select... Residue, so the bug seems to be specific to Chimera.
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 16, 2022, at 8:49 AM, Marco Sette via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Dear all,
When I fetch a protein with a chromophore (PDB code 2h5q), the chromophore, not a standard one, is missing, and not present in the Select-Residue menu. Is there any way to obtain it?
Thanks,
Marco
-- Dr Marco Sette, PhD. Department of Chemical Sciences and Technology University of Rome, "Tor Vergata" via della Ricerca Scientifica, 00133, Rome, Italy e-mail: sette@uniroma2.it Tel.: +39-0672594424
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