Dear Dr. Elaine, Thank you for the reply. I tried to report the bug before I mailed this group. To be exact for the past two days, I tried to report the bug. But, It didn't work. The preference I was talking about is the "web access" in which i changed the http proxy true and tried. I have tried Fetching pdb, Emdb, which was successful. But, with uniprot I'm getting the previously mentioned error. I have tried different uniprot Ids but I get the same error. On Thu, Oct 24, 2013 at 10:18 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Pavithra, I can't reproduce this problem -- the fetch of UniProt oprd_human is successful for me in Chimera 1.7 and newer versions of Chimera. I don't know what preference you are talking about... if you meant the download directory, that only specifies a local directory for saving the files and should not have "http" in it.
In general, you should report problems using the Chimera menu: Help... Report a Bug instead of sending email to this address. In the report form, you can include a description of what you did and your email (if you want feedback). Some other things to try and maybe mention in the report: can you fetch anything from UniProt? Can you fetch anything from any database (PDB, etc.)? Thanks Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 23, 2013, at 6:01 PM, Pavithra wrote:
Dear chimera users,
I'm trying comparative modeling tutorial in chimera tutorials and I'm getting the following error in using fetch uniprot id.
Steps followed: Menu--> fetch by ID--> selected uniprot--> "oprd_human" "P41143" (tried all combinations)
Error:
BadStatusLine: ''
File "C:\Program Files\Chimera 1.7\bin\lib\httplib.py", line 371, in _read_status raise BadStatusLine(line)
See reply log for Python traceback.
I tried changing the preference to use "http" but nothing fix it. please help.
-- regards, Pavithra.K.B. _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
-- regards, Pavithra.K.B.