Hi Tom,

Thanks for the update. I've installed the new build and got an error message when trying to run the molmap command. I generated a bug report that you can look at.

James

Tom Goddard wrote:

Hi James,

I just added a Chimera command molmap to make a density map from an atomic model. It sums Gaussians for each atom. If your pseudo-atom saxs model is opened as model id 0 you would run it like

molmap #0 3.75

and it will create the map and display it with volume viewer. Here the resolution is 3.75 and you probably want to try other values. You can add a gridSpacing parameter to get smoother appearance (defaults to 1/3 resolution). This command is not yet documented. It has been in Chimera builds for a few days but you should try tonight's build (if it succeeds) because I forgot to include some C++ optimization in earlier builds.

http://www.cgl.ucsf.edu/chimera/alpha-downloads.html

Tom

-- 
James Fethiere, Ph.D.
Institut de Recherche en Immunologie et Cancerologie
Pavillon Marcelle Coutu, University de Montreal
2900 edouard-montpetit
Montreal, Qc  H3t 1J4
Tel: 514-343-6111 ext. 0918/0919
Fax: 514-343-5839
james.fethiere@umontreal.ca