Hi Dmitry,

  Here's some example Python code to flip atom z coordinates in our newer program ChimeraX.

http://plato.cgl.ucsf.edu/trac/chimera/wiki/FlipZ

  Tom


On Sep 3, 2020, at 2:45 AM, Dmitry Semchonok <semchonok@gmail.com> wrote:

Dear Elaine,
 
By ‘model’ I mean coordinate file that is build up by coot/phenix for fitting into the volume map.
The ‘vop zflip’ works for the volume maps
 
 
Any options how to flip the coordinate map?
 
 
Thank you!
 
Sincerely,
Dmitry
 
От: Elaine Meng
Отправлено: 2 сентября 2020 г. в 19:07
Кому: Dmitry Semchonok
Копия: Chimera
Тема: Re: [Chimera-users] flipping model in chimera
 
Hi Dmitry,
It depends what you mean by "model" but for maps in Chimera there is a "vop zflip" command for flipping about the Z axis only:
 
There is no option to do this for other types of models.
 
ChimeraX map flipping ("volume flip") can use other axes, not just Z:
 
I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco
 
 
 
 
> On Sep 2, 2020, at 8:40 AM, Dmitry Semchonok <semchonok@gmail.com> wrote:
> 
> Dear colleagues,
>  
> How to flip the model in chimera?
>  
> Thank you!
>  
> Sincerely.
> Dmitry
>  
>  
> Отправлено из приложения "Почта" для Windows 10
>  
> _______________________________________________
> Chimera-users mailing list: Chimera-users@cgl.ucsf.edu
 
 
_______________________________________________
Chimera-users mailing list: Chimera-users@cgl.ucsf.edu
Manage subscription: https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users