Dear Elaine and Tom,

Thank you both for the instruction over this, both methods are perfect for what I wanted to try!! I’ll get on with it then.

Confirming the python script works for me with the latest version.

Awesome.

Kyle

On 19 Jan 2017, at 15:05, Tom Goddard <goddard@sonic.net> wrote:

Hi Kyle,

  Here is the fixed script avalnogui.py to report density map values at atom positions.  It is also at the Chimera Python scripts web page.


I made it take the file paths on the command line, for instance, 

$ chimera --nogui --silent --script "avalnogui.py 1a0m.pdb 1a0m.omap"
#1:1.A@N               3.722
#1:1.A@CA              3.345
#1:1.A@C                4.04
...


  Tom

<avalnogui.py>


On Jan 18, 2017, at 7:36 PM, Kyle Morris <kylelmorris@berkeley.edu> wrote:

Dear chimera dev and users,

Can anyone confirm with the latest chimera version (i’m running v1.11.2 build 41376) if this python script for measuring map values at atoms works for them?

The script was reported previously on the users list here: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2007-May/001587.html

For me I get a python import error:
 from VolumeViewer import Data_Region, full_region, Rendering_Options

Thanks for your insight!

Best wishes,
Kyle
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