Thanks Elaine and I guess then I could use something like the code below (found it in an old thread) to save the Reply Log within the script: from chimera.tkgui import saveReplyLog saveReplyLog("savefilename") H. Hernando Sosa Dept. of Physiology and Biophysics Albert Einstein College of Medicine 1300 Morris Park Av. Bronx NY 10461 phone (718) 430-3456 FAX (718) 430-8819 email hernando.sosa@einstein.yu.edu -----Original Message----- From: Elaine Meng [mailto:meng@cgl.ucsf.edu] Sent: Monday, November 19, 2018 2:07 PM To: Hernando J Sosa Cc: chimera-users Subject: Re: [Chimera-users] Values at Atom Oositions Hi Hernando, Unfortunately there is no command to save attributes directly to file. One idea is use the “report all” option of “measure mapValues” to send the values to the Reply Log and then save the Reply Log as described at the bottom of this page: <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimera%2Fdocs%2FProgrammersGuide%2FbasicPrimer.html&data=02%7C01%7Chernando.sosa%40einstein.yu.edu%7C9d512ab7df674c3e90b108d64e5233f4%7C04c70eb48f2648079934e02e89266ad0%7C1%7C0%7C636782512294370427&sdata=aTW4EFNl5V%2FRTVvED4H5Ynqe8LSPgTIiBLGZFfgUlG8%3D&reserved=0> The “list atoms” command does a similar thing, lists values of an existing attribute in the Reply Log. <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimera%2Fdocs%2FUsersGuide%2Fmidas%2Flisten.html%23listatoms&data=02%7C01%7Chernando.sosa%40einstein.yu.edu%7C9d512ab7df674c3e90b108d64e5233f4%7C04c70eb48f2648079934e02e89266ad0%7C1%7C0%7C636782512294370427&sdata=fpDY7yXP%2BTRcbAKFJj6OSnko4GE2gx7Sec0YLulp4vU%3D&reserved=0> Best, Elaine
On Nov 19, 2018, at 10:49 AM, Hernando J Sosa <hernando.sosa@einstein.yu.edu> wrote:
Thanks Elaine, and it would be possible to save the resulting attributes to a file within the script without using the GUI? Something like: measure mapValues map-model atom-spec <my_att_name> saveattributes2file <my_att_name> <my_file>
OR measure mapValues map-model atom-spec <outfilename>
Thanks again
Hernando.