Hi Zaher, Actually Morph Conformations does include all of the sidechains for the residues that are the same type (e.g. PHE in both structures), so if the two conformations are the enzyme with the same sequence, it should include everything except the TYR->TPO phosphate part. The manual page explains what atoms are included: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/morph/morph.html#pairing> Probably you just need to display the atoms, e.g. command “display” or menu: Actions… Atoms/Bonds… show (you may want to try the Getting Started tutorial: <http://www.rbvi.ucsf.edu/Outreach/Tutorials/GettingStarted.html>) This is a common morphing situation… see for example the first movie in the Chimera animation gallery: <http://www.rbvi.ucsf.edu/chimera/animations/animations.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 27, 2019, at 2:24 PM, arrafzaher@campus.technion.ac.il wrote:
Hi, I noticed Morph conformation only compares backbone Is it possible to compare side chains conformation change Lets say enzyme vs. phosphorylated same enzyme on a tyrosine residue (TPO) Thanks Zaher