hi,
consider creating bonds only after checking their valencies and bondtype like single or double bond.
Hope this will help you.
Mary
--- On Sat, 10/9/11, Bala subramanian <bala.biophysics@gmail.com> wrote:
From: Bala subramanian <bala.biophysics@gmail.com>
Subject: [Chimera-users] structure editing query
To: "chimera-users BB" <chimera-users@cgl.ucsf.edu>
Date: Saturday, 10 September, 2011, 4:17 PM-----Inline Attachment Follows-----Friends,
I am trying to modify the sugar of a nucleotide. I am interested in making a linkage of two carbons in the sugar as in the attached pdb. I tried to use the Build structure -> modify structure option but it does not work in the sense that when i select carbon atom (c2') and tried to connect it to an oxygen, chimera says that it is already bonded and hence some bonds to create a new one. Is there any way to make such linkages as in the pdb ?
Thanks,
Bala
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