Dear S, You can draw any atom-atom lines ("pseudobonds") you want, by creating a text file that lists the pairs of atoms and then reading that file in using PseudoBond Reader (under Tools... Depiction). Colors and labels can also be given in the file. PseudBond Reader and the file format are described here: <http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/pbreader/pbreader.html> After you create the pseudobonds, you can change other things about their appearance (line width, line style, ... ) using "attributes" in PseudoBond Panel (under Tools... General Controls), or individually by selecting a pseudobond and then using the Selection Inspector, or with the command "setattr". <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/pbpanel.html> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/inspection.html> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/setattr.html> I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Jun 10, 2010, at 11:26 AM, snoze pa wrote:
Dear Chimera Users, Manually How can I show hbonds in chimera. Suppose I want to h bonds between residue 65 NH and 80 O. and show them using red or blue color. Is it possible to read this information from a file so that I can read all hbonds information in one run. Thank you S