The RMSD info is printed on standard output. If you are using any Unix-like shell, you can redirect standard output into a file with the '>' operator, something like:

If you aren't using a Unix-like shell, perhaps you could describe how you are executing Chimera in nogui mode and we can go from there.

Eric Pettersen

UCSF Computer Graphics Lab

http://www.cgl.ucsf.edu

On Sep 10, 2008, at 2:00 PM, Ryan wrote:

Hi again,

I'd like to save the rmsd values calculated by chimera's 'rmsd' command when running in 'nogui' mode. What's the best way to go about this? Thanks!

-ryan _______________________________________________
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