The Autodock Vina "exhaustiveness" parameter (at least for the web service) is documented to be a value between 1 and 8 (see http://nbcr-222.ucsd.edu/opal2/CreateSubmissionForm.do?serviceURL=http://loc...), so I'm afraid there is no way to use a larger value. Sorry. Conrad On 4/29/2015 9:40 AM, Tunc Morova wrote:
Hello!
I am using UCSF Chimera, Autodock Vina extension for obtaining conformations of my protein and ligand. In this interface, As you know, I can change the exhaustiveness value between 1-8. However, since my system is more than 30x30x30 A, I need to get my exhaustiveness value more than 8 for getting more accurate results. But I can’t make it more than 8 through Auto dock Vina interface in Chimera. How can I increase this exhaustiveness value ?
Btw, Instead of using Opal web service, I am using vina locally.
Thank you many times for your help
Best Regards
Tunc Morova _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users