
Dear All, I am trying to color code a structure according to HetNOE. When I load the attribute list using "Define Attribute" via the "Structure Analysis" menu the program does not automatically open the "Render by Attribute" menu. If I click and open the "Render by Attribute" menu, the program does not show my file in the attributes list for residues. Does anyone have an idea of why this happen? I have pasted my attribute's list below. Thank you, Roberto attribute: teste recipient: residues :377.000000 0.842818 :378.000000 1.273292 :379.000000 0.763398 :384.000000 0.852818 :387.000000 0.999787 :388.000000 0.572572 :389.000000 1.016109 :393.000000 0.950908 :397.000000 0.761818 :399.000000 0.712411 :402.000000 0.388721 :403.000000 0.495060 :408.000000 0.460664 :411.000000 0.973597 :412.000000 1.036187

Hi Roberto, The atom specifiers you are using (the first of the two data columns) are incorrect. For example, ":377.000000" selects residue 377 in chain 000000, which does not exist unless you have a spectacularly unusual structure. :-) You probably either want just ":377" (all residues numbered 377) or something like ":377.A" (residue 377 in chain A). Atom specifiers are discussed in detail here: http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/atom_spec.html --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On May 21, 2009, at 2:02 PM, Roberto Kopke Salinas wrote:
Dear All,
I am trying to color code a structure according to HetNOE. When I load the attribute list using "Define Attribute" via the "Structure Analysis" menu the program does not automatically open the "Render by Attribute" menu. If I click and open the "Render by Attribute" menu, the program does not show my file in the attributes list for residues.
Does anyone have an idea of why this happen? I have pasted my attribute's list below.
Thank you,
Roberto
attribute: teste recipient: residues :377.000000 0.842818 :378.000000 1.273292 :379.000000 0.763398 :384.000000 0.852818 :387.000000 0.999787 :388.000000 0.572572 :389.000000 1.016109 :393.000000 0.950908 :397.000000 0.761818 :399.000000 0.712411 :402.000000 0.388721 :403.000000 0.495060 :408.000000 0.460664 :411.000000 0.973597 :412.000000 1.036187
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Dear Eric, Thank you so much. This solved the problem. Best, Roberto On 5/21/09, Eric Pettersen <pett@cgl.ucsf.edu> wrote:
Hi Roberto, The atom specifiers you are using (the first of the two data columns) are incorrect. For example, ":377.000000" selects residue 377 in chain 000000, which does not exist unless you have a spectacularly unusual structure. :-) You probably either want just ":377" (all residues numbered 377) or something like ":377.A" (residue 377 in chain A). Atom specifiers are discussed in detail here: http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/atom_spec.html
--Eric
Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu
On May 21, 2009, at 2:02 PM, Roberto Kopke Salinas wrote:
Dear All,
I am trying to color code a structure according to HetNOE. When I load the attribute list using "Define Attribute" via the "Structure Analysis" menu the program does not automatically open the "Render by Attribute" menu. If I click and open the "Render by Attribute" menu, the program does not show my file in the attributes list for residues.
Does anyone have an idea of why this happen? I have pasted my attribute's list below.
Thank you,
Roberto
attribute: teste recipient: residues :377.000000 0.842818 :378.000000 1.273292 :379.000000 0.763398 :384.000000 0.852818 :387.000000 0.999787 :388.000000 0.572572 :389.000000 1.016109 :393.000000 0.950908 :397.000000 0.761818 :399.000000 0.712411 :402.000000 0.388721 :403.000000 0.495060 :408.000000 0.460664 :411.000000 0.973597 :412.000000 1.036187
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participants (2)
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Eric Pettersen
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Roberto Kopke Salinas