Write DMS missing from Tools->Structure Editing menu? (v 1.6.2 and v 1.7)
Hi, My first posting here, and I have come here after google searching high and low about this. I understand that Write DMS is now a standard part of Chimera, but I am (or more correctly, the users I support) not able to access or use it from the Tools->Structure Editing menu. I installed the binaries (x86_64 and x86) from the UCSF Chimera site, but none of them seem to have Write DMS functionality. I am running Ubuntu 12.04.1 LTS (Precise) on a Dell Vostro 486 PC, Intel Core i7-2600 3.4 gHz, 8 Gb RAM, 1 Tb SATA HDD, Video AMD Radeon HD 6450 1GB DDR3. What am I doing wrong? You can click on this link for a screenshot of what I see (its an XMing screenshot, but the view is the same in Ubuntu) http://www.sfu.ca/~dgnapier/post/chimera-DMS.jpg Any suggestions much appreciated! -- Thanks, Duncan.
Hi Duncan, That looks like some very old version of Chimera. There should be many more entries in that menu, including Write DMS. Maybe even though you downloaded a newer version, what you are starting up is old?? You can check version with command "version" or menu: Help... About UCSF Chimera. I doublechecked in Chimera 1.6.2, 1.7 and daily build (1.8) on my machine and they all have Write DMS in that menu. Download page: <http://www.cgl.ucsf.edu/chimera/download.html> Write DMS: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/dms.html#writedms> Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Jan 31, 2013, at 11:13 AM, Duncan Napier wrote:
Hi, My first posting here, and I have come here after google searching high and low about this. I understand that Write DMS is now a standard part of Chimera, but I am (or more correctly, the users I support) not able to access or use it from the Tools->Structure Editing menu.
I installed the binaries (x86_64 and x86) from the UCSF Chimera site, but none of them seem to have Write DMS functionality.
I am running Ubuntu 12.04.1 LTS (Precise) on a Dell Vostro 486 PC, Intel Core i7-2600 3.4 gHz, 8 Gb RAM, 1 Tb SATA HDD, Video AMD Radeon HD 6450 1GB DDR3.
What am I doing wrong? You can click on this link for a screenshot of what I see (its an XMing screenshot, but the view is the same in Ubuntu)
http://www.sfu.ca/~dgnapier/post/chimera-DMS.jpg
Any suggestions much appreciated!
Hi, Thanks. It looks like there are 2 versions on the system. Someone put in an alias to an old version, which is what ran, overriding all PATH orders etc. Duncan. ----- Original Message -----
Hi Duncan, That looks like some very old version of Chimera. There should be many more entries in that menu, including Write DMS. Maybe even though you downloaded a newer version, what you are starting up is old?? You can check version with command "version" or menu: Help... About UCSF Chimera. I doublechecked in Chimera 1.6.2, 1.7 and daily build (1.8) on my machine and they all have Write DMS in that menu.
Download page: <http://www.cgl.ucsf.edu/chimera/download.html>
Write DMS: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/dms.html#writedms>
Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 31, 2013, at 11:13 AM, Duncan Napier wrote:
Hi, My first posting here, and I have come here after google searching high and low about this. I understand that Write DMS is now a standard part of Chimera, but I am (or more correctly, the users I support) not able to access or use it from the Tools->Structure Editing menu.
I installed the binaries (x86_64 and x86) from the UCSF Chimera site, but none of them seem to have Write DMS functionality.
I am running Ubuntu 12.04.1 LTS (Precise) on a Dell Vostro 486 PC, Intel Core i7-2600 3.4 gHz, 8 Gb RAM, 1 Tb SATA HDD, Video AMD Radeon HD 6450 1GB DDR3.
What am I doing wrong? You can click on this link for a screenshot of what I see (its an XMing screenshot, but the view is the same in Ubuntu)
http://www.sfu.ca/~dgnapier/post/chimera-DMS.jpg
Any suggestions much appreciated!
participants (2)
-
Duncan Napier -
Elaine Meng