Dear Elaine, Hi, hope you are doing well. I used Chimera for protein docking. But I got stuck in the last step when setting the local path. I downloaded the windows version and that installed to C drive program files and like this C:\Program Files(86)\The Scripps Research Institute But even after browse even it doesn't show any vina.exe file when setting the local path.Can you please tell me where I can find that? Or how to check whether that properly installed or not? Inside the Vina folder there are 3 files which two were applications files.But no exe file is visible I went many tutorials and heard after 2020 we need to install Auto dock vina to support Chimera. I did that as well.But still I can't properly debug this. Different you tube videos they mentioned inside Vina folder can fine vina.exe or inside bin can find vina.exe. Apperciate your help on this and your earliest reply.Thank you Kind regards Heshani
Hi Heshani, I do not know where the vina executable is, since I have not downloaded or installed it myself, and I don't have a Windows machine on which to try that. We are not the Autodock Vina developers. Maybe you can ask on the Autodock Vina help list where the executable file is when you install the Windows version: <http://vina.scripps.edu/questions.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Mar 10, 2021, at 9:14 AM, Heshani Mudalige <heshani.m@bms.edu.lk> wrote:
Dear Elaine, Hi, hope you are doing well. I used Chimera for protein docking. But I got stuck in the last step when setting the local path. I downloaded the windows version and that installed to C drive program files and like this C:\Program Files(86)\The Scripps Research Institute But even after browse even it doesn't show any vina.exe file when setting the local path.Can you please tell me where I can find that? Or how to check whether that properly installed or not? Inside the Vina folder there are 3 files which two were applications files.But no exe file is visible I went many tutorials and heard after 2020 we need to install Auto dock vina to support Chimera. I did that as well.But still I can't properly debug this. Different you tube videos they mentioned inside Vina folder can fine vina.exe or inside bin can find vina.exe. Apperciate your help on this and your earliest reply.Thank you Kind regards Heshani
Hi Elaine The vina file is usually downloaded to C:/Program Files (x86)/The Scripps Research Institute/Autodock /4.2.6/autodock4.exe. (it may not be 4.2.6 or autodock4, depending on the version you dowloaded) Hope this helps Anthony Lee ________________________________ From: Chimera-users <chimera-users-bounces@cgl.ucsf.edu> on behalf of Elaine Meng <meng@cgl.ucsf.edu> Sent: 10 March 2021 17:44 To: Heshani Mudalige <heshani.m@bms.edu.lk> Cc: chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu> Subject: Re: [Chimera-users] Regarding Chimera vina executable file CAUTION: This e-mail originated outside the University of Southampton. Hi Heshani, I do not know where the vina executable is, since I have not downloaded or installed it myself, and I don't have a Windows machine on which to try that. We are not the Autodock Vina developers. Maybe you can ask on the Autodock Vina help list where the executable file is when you install the Windows version: <https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fvina.scripps.edu%2Fquestions.html&data=04%7C01%7CA.G.Lee%40soton.ac.uk%7Cbf68d8b8923b4cf8101708d8e3ee0ee7%7C4a5378f929f44d3ebe89669d03ada9d8%7C0%7C0%7C637509958879998157%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=gS9ONAlDmymR05lZGjbOck5%2B1Ba2%2FO%2B5AZ54enTCNsk%3D&reserved=0> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Mar 10, 2021, at 9:14 AM, Heshani Mudalige <heshani.m@bms.edu.lk> wrote:
Dear Elaine, Hi, hope you are doing well. I used Chimera for protein docking. But I got stuck in the last step when setting the local path. I downloaded the windows version and that installed to C drive program files and like this C:\Program Files(86)\The Scripps Research Institute But even after browse even it doesn't show any vina.exe file when setting the local path.Can you please tell me where I can find that? Or how to check whether that properly installed or not? Inside the Vina folder there are 3 files which two were applications files.But no exe file is visible I went many tutorials and heard after 2020 we need to install Auto dock vina to support Chimera. I did that as well.But still I can't properly debug this. Different you tube videos they mentioned inside Vina folder can fine vina.exe or inside bin can find vina.exe. Apperciate your help on this and your earliest reply.Thank you Kind regards Heshani
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participants (3)
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Anthony Lee -
Elaine Meng -
Heshani Mudalige