import GRID contour map
Hi All, I try to import a contour map generated with GRID and saved as *.grd or *.cnt file. Trying to open th e*.grd file in chimera I get the error message Opening I:\strukturen\prep_modTemp\1j1b_DRY.grd I:\strukturen\prep_modTemp\1j1b_DRY.grd: UHBD file does not contain integer value 1 at bytes 96-99 using either little or big endian byte order. Found 46146 Done opening I:\strukturen\prep_modTemp\1j1b_DRY.grd With *.cnt I get file not found, because file is supposed to be a *.bmp. Does anybody have an idea, how to open my nice GRID contour map? Greetings Sebastian -- Sebastian Kruggel Institut für Pharmazie Raum 112 Bundesstr.45 D 20146 Hamburg Tel. +49(0)40 42838 3626 Hi All, I try to import a contour map generated with GRID and saved as *.grd or *.cnt file. Trying to open th e*.grd file in chimera I get the error message Opening I:\strukturen\prep_modTemp\1j1b_DRY.grd I:\strukturen\prep_modTemp\1j1b_DRY.grd: UHBD file does not contain integer value 1 at bytes 96-99 using either little or big endian byte order. Found 46146 Done opening I:\strukturen\prep_modTemp\1j1b_DRY.grd With *.cnt I get ‘file not found’, because file is supposed to be a *.bmp. Does anybody have an idea, how to open my nice GRID contour map? Greetings Sebastian -- Sebastian Kruggel Institut für Pharmaz ie Raum 112 Bundesstr.45 D 20146 Hamburg Tel. +49(0)40 42838 3626
already answered: http://www.cgl.ucsf.edu/pipermail/chimera-users/2008-August/002885.html Also, here is information on how to add formats by writing python code: http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/ volumeviewer.html#newformats On Jul 31, 2008, at 10:11 AM, Sebastian Kruggel wrote:
Hi All,
I try to import a contour map generated with GRID and saved as *.grd or *.cnt file. Trying to open th e*.grd file in chimera I get the error message
Opening I:\strukturen\prep_modTemp\1j1b_DRY.grd I:\strukturen\prep_modTemp\1j1b_DRY.grd: UHBD file does not contain integer value 1 at bytes 96-99 using either little or big endian byte order. Found 46146 Done opening I:\strukturen\prep_modTemp\1j1b_DRY.grd
With *.cnt I get ‘file not found’, because file is supposed to be a *.bmp.
Does anybody have an idea, how to open my nice GRID contour map? Greetings Sebastian
Hi Sebastian You can convert the your contour map to Chimera supported file format (like .mrc or .map) using "bimg" of the BSOFT package ( http://lsbr.niams.nih.gov/bsoft/ For more details contact - Bernard Heymann of BSOFT Bernard Heymann, Ph.D. E-mail: heymannb@mail.nih.gov Andy On Thu, 31 Jul 2008 19:11:26 +0200 "Sebastian Kruggel" <kruggel@chemie.uni-hamburg.de> wrote:
Hi All,
I try to import a contour map generated with GRID and saved as *.grd or *.cnt file.
Trying to open th e*.grd file in chimera I get the error message
Opening I:\strukturen\prep_modTemp\1j1b_DRY.grd
I:\strukturen\prep_modTemp\1j1b_DRY.grd: UHBD file does not contain integer value 1 at bytes 96-99
using either little or big endian byte order. Found 46146
Done opening I:\strukturen\prep_modTemp\1j1b_DRY.grd
On Thu, 31 Jul 2008 19:11:26 +0200 "Sebastian Kruggel" <kruggel@chemie.uni-hamburg.de> wrote:
Hi All,
I try to import a contour map generated with GRID and saved as *.grd or *.cnt file.
Trying to open th e*.grd file in chimera I get the error message
Opening I:\strukturen\prep_modTemp\1j1b_DRY.grd
I:\strukturen\prep_modTemp\1j1b_DRY.grd: UHBD file does not contain integer value 1 at bytes 96-99
using either little or big endian byte order. Found 46146
Done opening I:\strukturen\prep_modTemp\1j1b_DRY.grd
With *.cnt I get file not found, because file is supposed to be a *.bmp.
Does anybody have an idea, how to open my nice GRID contour map?
Greetings
Sebastian
--
Sebastian Kruggel
Institut für Pharmazie
Raum 112 Bundesstr.45 D 20146 Hamburg
Tel. +49(0)40 42838 3626
Dr. Anindito Sen (Ph.D) Research Associate , Dept. of Biochemistry and Molecular Genetics University of Virginia Box 800733 Charlottesville, VA 22908
participants (3)
-
Anindito Sen -
Elaine Meng -
Sebastian Kruggel