visualizing distance restraints using Chimera
Is there any way to import a list of distance restraints and have Chimera display them based on the restraint violation. -- Matthew Fountain Professor and Chair Fredonia State University of New York Chemistry and Biochemistry Department
Hello Matthew Fountain, See the ChimeraX plugin “Xlink Analyzer” available separately from this website: <https://www.embl-hamburg.de/XlinkAnalyzer/XlinkAnalyzer.html> … see also publication (open access): Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures. Kosinski J, von Appen A, Ori A, Karius K, Müller CW, Beck M. J Struct Biol. 2015 Mar;189(3):177-83. <https://www.sciencedirect.com/science/article/pii/S1047847715000301> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 16, 2019, at 8:43 AM, Matthew Fountain <Matthew.Fountain@fredonia.edu> wrote:
Is there any way to import a list of distance restraints and have Chimera display them based on the restraint violation. -- Matthew Fountain Professor and Chair Fredonia State University of New York Chemistry and Biochemistry Department
Make that “Chimera plugin,” NOT ChimeraX … I got carried away with the X’s! Elaine
On Jul 16, 2019, at 10:03 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hello Matthew Fountain, See the ChimeraX plugin “Xlink Analyzer” available separately from this website: <https://www.embl-hamburg.de/XlinkAnalyzer/XlinkAnalyzer.html>
… see also publication (open access): Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures. Kosinski J, von Appen A, Ori A, Karius K, Müller CW, Beck M. J Struct Biol. 2015 Mar;189(3):177-83. <https://www.sciencedirect.com/science/article/pii/S1047847715000301>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 16, 2019, at 8:43 AM, Matthew Fountain <Matthew.Fountain@fredonia.edu> wrote:
Is there any way to import a list of distance restraints and have Chimera display them based on the restraint violation. -- Matthew Fountain Professor and Chair Fredonia State University of New York Chemistry and Biochemistry Department
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participants (2)
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Elaine Meng -
Matthew Fountain