How can I export the list of hydrogen bonding and clash/contact?
Hi, I have a structure of protein-DNA complex. How can I export the list of hydrogen bonding and clash/contact, please? Thanks a lot, Paris
Hi Paris, If you are using the tool dialogs (Tools… Structure Analysis… FIndHBond, Find Clashes/Contacts) they have checkbox options to “Write information to file". Click the Help button on the dialogs to see their help pages, or view the same information on our web site: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash.html> Or, if you are using the commands “findhbond” (or “hbonds”) or “findclash” they each have a “saveFile” option. <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/hbonds.html> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/findclash.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 14, 2018, at 6:06 PM, Paris Tzou <paristzou@gmail.com> wrote:
Hi, I have a structure of protein-DNA complex. How can I export the list of hydrogen bonding and clash/contact, please? Thanks a lot, Paris
Thank you for your help! Paris Elaine Meng <meng@cgl.ucsf.edu> 於 2018年11月16日 週五 上午1:31寫道：
Hi Paris, If you are using the tool dialogs (Tools… Structure Analysis… FIndHBond, Find Clashes/Contacts) they have checkbox options to “Write information to file". Click the Help button on the dialogs to see their help pages, or view the same information on our web site:
< http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbon...
< http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclas...
Or, if you are using the commands “findhbond” (or “hbonds”) or “findclash” they each have a “saveFile” option.
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/hbonds.html> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/findclash.html>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 14, 2018, at 6:06 PM, Paris Tzou <paristzou@gmail.com> wrote:
Hi, I have a structure of protein-DNA complex. How can I export the list of hydrogen bonding and clash/contact, please? Thanks a lot, Paris
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Paris Tzou