fail to install chimera 1.12
Hello, I would appreciate your help for some problems with installation of chimera 1.12 in rhel 7.4 linux. Although we have installed chimera in rhel 5.4 before, this time we upgraded OS to rhel 7.4 and run into the problem. Basically I downloaded the binary file from your website and run the bin file in the Download directory. But the process failed. I have included the error message in the attachment and would appreciate your help. Sincrely, Haoming Zhang PhD Research Assistant Professor The University of Michigan Ann Arbor, MI PS. I have troubled attaching the file. SO I paste it below: root@boxx Downloads]# ./chimera-1.12-linux_x86_64.bin UnZipSFX 5.41 of 16 April 2000, by Info-ZIP (Zip-Bugs@lists.wku.edu). Original path: '/root/Downloads' inflating: chimera_install_aelQQu/installer inflating: chimera_install_aelQQu/chimera.bin Enter install location: /opt/UCSF/Chimera64-1.12 Extracting files. This may take a few minutes. Executing command: './chimera.bin -q -d /opt/UCSF/Chimera64-1.12' UnZipSFX 5.52 of 28 February 2005, by Info-ZIP (http://www.info-zip.org). Install desktop menu (icon has to be done by user)? yes Traceback (most recent call last): File "/opt/UCSF/Chimera64-1.12/share/__main__.py", line 69, in <module> value = chimeraInit.init(sys.argv) File "/opt/UCSF/Chimera64-1.12/share/chimeraInit.py", line 628, in init import chimera File "/opt/UCSF/Chimera64-1.12/share/chimera/__init__.py", line 2758, in <module> from SimpleSession import BEGIN_RESTORE_SESSION, END_RESTORE_SESSION File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/__init__.py", line 14, in <module> from save import saveSession, sessionID, noAutoRestore, autoRestorable, \ File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/save.py", line 13, in <module> from chimera import replyobj, selection, SessionPDBio, version File "/opt/UCSF/Chimera64-1.12/share/chimera/replyobj.py", line 24, in <module> import Tkinter File "/opt/UCSF/Chimera64-1.12/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> import _tkinter # If this fails your Python may not be configured for Tk ImportError: libXss.so.1: cannot open shared object file: No such file or directory ERROR in chimera_final_install: unable to install desktop icon: result code from installer: 256 Installer returned unexpected return code '256' Cleaning up extract dir, 'chimera_install_aelQQu' Installation is done; press return. When I run chimera in the installed directory, I got this error. root@boxx bin]# ./chimera Traceback (most recent call last): File "/opt/UCSF/Chimera64-1.12/share/__main__.py", line 69, in <module> value = chimeraInit.init(sys.argv) File "/opt/UCSF/Chimera64-1.12/share/chimeraInit.py", line 628, in init import chimera File "/opt/UCSF/Chimera64-1.12/share/chimera/__init__.py", line 2758, in <module> from SimpleSession import BEGIN_RESTORE_SESSION, END_RESTORE_SESSION File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/__init__.py", line 14, in <module> from save import saveSession, sessionID, noAutoRestore, autoRestorable, \ File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/save.py", line 13, in <module> from chimera import replyobj, selection, SessionPDBio, version File "/opt/UCSF/Chimera64-1.12/share/chimera/replyobj.py", line 24, in <module> import Tkinter File "/opt/UCSF/Chimera64-1.12/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> import _tkinter # If this fails your Python may not be configured for Tk ImportError: libXss.so.1: cannot open shared object file: No such file or directory
Hello, As you saw at the end of the traceback, libXss.so.1 is missing from your system. To fix that, the administrator of your system needs to install the libXScrnSaver package. On RHEL or CentOS that can be done by executing: sudo yum install libXScrnSaver Not sure why it isn't already installed. -- Greg On 12/1/2017 8:47 AM, Haoming Zhang wrote:
Hello,
I would appreciate your help for some problems with installation of chimera 1.12 in rhel 7.4 linux. Although we have installed chimera in rhel 5.4 before, this time we upgraded OS to rhel 7.4 and run into the problem. Basically I downloaded the binary file from your website and run the bin file in the Download directory. But the process failed. I have included the error message in the attachment and would appreciate your help.
Sincrely, Haoming Zhang PhD Research Assistant Professor The University of Michigan Ann Arbor, MI
PS. I have troubled attaching the file. SO I paste it below: root@boxx Downloads]# ./chimera-1.12-linux_x86_64.bin UnZipSFX 5.41 of 16 April 2000, by Info-ZIP (Zip-Bugs@lists.wku.edu <mailto:Zip-Bugs@lists.wku.edu>). Original path: '/root/Downloads' inflating: chimera_install_aelQQu/installer inflating: chimera_install_aelQQu/chimera.bin
Enter install location: /opt/UCSF/Chimera64-1.12 Extracting files. This may take a few minutes. Executing command: './chimera.bin -q -d /opt/UCSF/Chimera64-1.12' UnZipSFX 5.52 of 28 February 2005, by Info-ZIP (http://www.info-zip.org).
Install desktop menu (icon has to be done by user)? yes Traceback (most recent call last): File "/opt/UCSF/Chimera64-1.12/share/__main__.py", line 69, in <module> value = chimeraInit.init(sys.argv) File "/opt/UCSF/Chimera64-1.12/share/chimeraInit.py", line 628, in init import chimera File "/opt/UCSF/Chimera64-1.12/share/chimera/__init__.py", line 2758, in <module> from SimpleSession import BEGIN_RESTORE_SESSION, END_RESTORE_SESSION File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/__init__.py", line 14, in <module> from save import saveSession, sessionID, noAutoRestore, autoRestorable, \ File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/save.py", line 13, in <module> from chimera import replyobj, selection, SessionPDBio, version File "/opt/UCSF/Chimera64-1.12/share/chimera/replyobj.py", line 24, in <module> import Tkinter File "/opt/UCSF/Chimera64-1.12/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> import _tkinter # If this fails your Python may not be configured for Tk ImportError: libXss.so.1: cannot open shared object file: No such file or directory ERROR in chimera_final_install: unable to install desktop icon: result code from installer: 256 Installer returned unexpected return code '256' Cleaning up extract dir, 'chimera_install_aelQQu' Installation is done; press return.
When I run chimera in the installed directory, I got this error.
root@boxx bin]# ./chimera Traceback (most recent call last): File "/opt/UCSF/Chimera64-1.12/share/__main__.py", line 69, in <module> value = chimeraInit.init(sys.argv) File "/opt/UCSF/Chimera64-1.12/share/chimeraInit.py", line 628, in init import chimera File "/opt/UCSF/Chimera64-1.12/share/chimera/__init__.py", line 2758, in <module> from SimpleSession import BEGIN_RESTORE_SESSION, END_RESTORE_SESSION File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/__init__.py", line 14, in <module> from save import saveSession, sessionID, noAutoRestore, autoRestorable, \ File "/opt/UCSF/Chimera64-1.12/share/SimpleSession/save.py", line 13, in <module> from chimera import replyobj, selection, SessionPDBio, version File "/opt/UCSF/Chimera64-1.12/share/chimera/replyobj.py", line 24, in <module> import Tkinter File "/opt/UCSF/Chimera64-1.12/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> import _tkinter # If this fails your Python may not be configured for Tk ImportError: libXss.so.1: cannot open shared object file: No such file or directory
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participants (2)
-
Greg Couch -
Haoming Zhang