Is there a way in chimera to obtain an RMSD between two structures without matching them, ie. just to know the difference between them? Miriam Gochin Touro University - CA miriam.gochin@tu.edu 707-638-5463
Hi Miriam, Yes, the command "rmsd" does exactly that. Syntax is the same as for "match" but unlike that command, it does not move anything, just calculates the RMSD in the current positions. <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/rmsd.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Apr 30, 2010, at 7:34 AM, Miriam Gochin wrote:
Is there a way in chimera to obtain an RMSD between two structures without matching them, ie. just to know the difference between them?
Thanks! Miriam Gochin Touro University - CA miriam.gochin@tu.edu 707-638-5463 ________________________________________ From: Elaine Meng [meng@cgl.ucsf.edu] Sent: Friday, April 30, 2010 10:00 AM To: Miriam Gochin Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] rmsd between two ligands Hi Miriam, Yes, the command "rmsd" does exactly that. Syntax is the same as for "match" but unlike that command, it does not move anything, just calculates the RMSD in the current positions. <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/rmsd.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Apr 30, 2010, at 7:34 AM, Miriam Gochin wrote:
Is there a way in chimera to obtain an RMSD between two structures without matching them, ie. just to know the difference between them?
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