less color depth possible?
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Hi all, We are trying to set up cryoEM data processing in the university HPC. We use X2go for remote accessing the HPC, but it doesn't have enough color depth, so Chimera (24-bit) doesn't start. One workaround is to download the volume from HPC to local machine, but it is less convenient. But I wonder is there a way to use Chimera in less color? Thanks a lot. Best, Tat
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Hi Tat, Chimera has no controls for color depth. I guess its OpenGL rendering asks for 8-bit color depth for the OpenGL context. What error does Chimera give? Using less than 8-bit color depth for visualization is absurd. X2Go must be able to do 24. Tom
On Jan 27, 2021, at 1:00 AM, Cheng, Tat <tcheng@biochem.mpg.de> wrote:
Hi all,
We are trying to set up cryoEM data processing in the university HPC. We use X2go for remote accessing the HPC, but it doesn't have enough color depth, so Chimera (24-bit) doesn't start.
One workaround is to download the volume from HPC to local machine, but it is less convenient. But I wonder is there a way to use Chimera in less color?
Thanks a lot.
Best, Tat _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu <mailto:Chimera-users@cgl.ucsf.edu> Manage subscription: https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users <https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
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Hi Tom, Thanks for your message. Here is the error message. I am confused as well, because X2go should be running at 24 bit as I read from the internet. Tat ________________________________ From: Tom Goddard <goddard@sonic.net> Sent: Wednesday, January 27, 2021 6:48:46 PM To: Cheng, Tat Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] less color depth possible? Hi Tat, Chimera has no controls for color depth. I guess its OpenGL rendering asks for 8-bit color depth for the OpenGL context. What error does Chimera give? Using less than 8-bit color depth for visualization is absurd. X2Go must be able to do 24. Tom On Jan 27, 2021, at 1:00 AM, Cheng, Tat <tcheng@biochem.mpg.de<mailto:tcheng@biochem.mpg.de>> wrote: Hi all, We are trying to set up cryoEM data processing in the university HPC. We use X2go for remote accessing the HPC, but it doesn't have enough color depth, so Chimera (24-bit) doesn't start. One workaround is to download the volume from HPC to local machine, but it is less convenient. But I wonder is there a way to use Chimera in less color? Thanks a lot. Best, Tat _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu<mailto:Chimera-users@cgl.ucsf.edu> Manage subscription: https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
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Tat, To use ChimeraX with x2go, you need to install virtualgl and then use "vglrun chimerax" to run ChimeraX. The problem is probably not the 24-bit visual, but the OpenGL support. -- Greg On 1/27/2021 11:00 AM, Cheng, Tat wrote:
Hi Tom,
Thanks for your message. Here is the error message. I am confused as well, because X2go should be running at 24 bit as I read from the internet.
Tat
------------------------------------------------------------------------ *From:* Tom Goddard <goddard@sonic.net> *Sent:* Wednesday, January 27, 2021 6:48:46 PM *To:* Cheng, Tat *Cc:* chimera-users@cgl.ucsf.edu *Subject:* Re: [Chimera-users] less color depth possible? Hi Tat,
Chimera has no controls for color depth. I guess its OpenGL rendering asks for 8-bit color depth for the OpenGL context. What error does Chimera give? Using less than 8-bit color depth for visualization is absurd. X2Go must be able to do 24.
Tom
On Jan 27, 2021, at 1:00 AM, Cheng, Tat <tcheng@biochem.mpg.de <mailto:tcheng@biochem.mpg.de>> wrote:
Hi all,
We are trying to set up cryoEM data processing in the university HPC. We use X2go for remote accessing the HPC, but it doesn't have enough color depth, so Chimera (24-bit) doesn't start.
One workaround is to download the volume from HPC to local machine, but it is less convenient. But I wonder is there a way to use Chimera in less color?
Thanks a lot.
Best, Tat _______________________________________________ Chimera-users mailing list:Chimera-users@cgl.ucsf.edu <mailto:Chimera-users@cgl.ucsf.edu> Manage subscription:https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users <https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
_______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
participants (3)
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Cheng, Tat
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Greg Couch
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Tom Goddard