Hi Terry, The solution is to use the 1.7 release. Those blips have been eliminated. You could also try turning on interactive shadows (Tools->Viewing Controls->Effects). If your graphics card supports them, they are very cool. --Eric On Feb 25, 2013, at 6:27 PM, Terry Lang wrote:

Hey Guys,

I am trying to compare a before-and-after active site. I have the CASTp pockets for each active site (2PXR pocket id 17 and 3H47 pocket id 18). However, both pocket representations have little hang-overs that are not part of the continuous pocket; I'd really just like to show the continuous pocket. I am trying to mask the overhangs and am failing. I tried coloring them white but they block the pocket. I then tried setting them to be transparent but now you can see through the entire blob (I sense a bug there). I can't figure out how to delete just a part of the blob. Other suggestions?

Thanks! Terry

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