Generating surface for docking models
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Dear Chimera team, Is there a way of generating the surface for docking models from ClusPro so I can map electrostatic potential or coulombic potential on it? Since my docking models are composed of three enzymes (2 dimers and 1 monomer), I tried surfacing in "Multiscale Models"but it gave me a very low resolution surface. Thank you! Fei
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Dear Fei, Is there a problem using the regular molecular surface (e.g. menu: Actions… Surface… show)? <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/representation.html#surfaces> If there is a problem, there are some additional ideas here (especially #3, “molmap” command): <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/surfprobs.html> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/molmap.html> I hope this helps. If I didn’t answer the question, please send more information about what you were trying to do. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Aug 22, 2014, at 10:53 AM, fei.wu@chem.utah.edu wrote:
Dear Chimera team,
Is there a way of generating the surface for docking models from ClusPro so I can map electrostatic potential or coulombic potential on it? Since my docking models are composed of three enzymes (2 dimers and 1 monomer), I tried surfacing in "Multiscale Models"but it gave me a very low resolution surface.
Thank you! Fei
participants (2)
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Elaine Meng
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fei.wu@chem.utah.edu