I'm doing Blast protein for a single sequence. After selecting the database (pdb) and setting other params, I receive this error in Reply log: BLAST Database error: Error: Not a valid version 4 database. How can I sort out it? Thanks for help
Hello, I don’t see this problem, when testing with Chimera 1.13, 1.14 or current daily build. If you have an older version of Chimera, try getting the 1.14 release. <http://www.rbvi.ucsf.edu/chimera/download.html> If version 1.14 gives you the error it may be your specific input. Use Chimera menu: Help… Report a Bug, and in the form describe everything needed to show the problem including the specific sequence you were searching with, and include your email if you want feedback. This form is more useful than just sending email because it automatically includes information about your computer system and version of Chimera. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Feb 17, 2020, at 12:55 AM, Ebrahim Barzegari <e.barzegari@kums.ac.ir> wrote:
I'm doing Blast protein for a single sequence. After selecting the database (pdb) and setting other params, I receive this error in Reply log: BLAST Database error: Error: Not a valid version 4 database. How can I sort out it? Thanks for help
This problem was "fixed" last week on the cluster node that was running the BLAST service. Unfortunately, the service migrated to an unfixed node, which is why you saw the error. The problem should be fixed on all our cluster nodes now. Sorry for the problem. Conrad On 2/18/2020 9:49 AM, Elaine Meng wrote:
Hello, I don’t see this problem, when testing with Chimera 1.13, 1.14 or current daily build.
If you have an older version of Chimera, try getting the 1.14 release. <http://www.rbvi.ucsf.edu/chimera/download.html>
If version 1.14 gives you the error it may be your specific input. Use Chimera menu: Help… Report a Bug, and in the form describe everything needed to show the problem including the specific sequence you were searching with, and include your email if you want feedback. This form is more useful than just sending email because it automatically includes information about your computer system and version of Chimera.
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Feb 17, 2020, at 12:55 AM, Ebrahim Barzegari <e.barzegari@kums.ac.ir> wrote:
I'm doing Blast protein for a single sequence. After selecting the database (pdb) and setting other params, I receive this error in Reply log: BLAST Database error: Error: Not a valid version 4 database. How can I sort out it? Thanks for help
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participants (3)
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Conrad Huang -
Ebrahim Barzegari -
Elaine Meng