One more thing. You might be running out of temporary disk space. Run the 'df' command in a shell to see which filesystems are full. If the filesystem with the trajectories has extra space, but / or /var is full, then set the TMPDIR environment variable to a directory on that filesystem before running chimera, so the temporary files get created on the other disk. HTH, Greg On 9/19/2014 9:34 AM, Greg Couch wrote:

While the traceback was not in the trajectory code, the clue is:

OSError: [Errno 28] No space left on device

You ran out of disk space. So if you free up some space by deleting some files or moving them to a different disk, you should be alright.

HTH,

Greg

On 9/19/2014 7:37 AM, Renato Freitas wrote:

...

I am trying to open a zipped amber trajectory with chimera but I am getting the following error:

################################# Traceback (most recent call last): File "/home/disk0/rfreitas/softwares/chimera/share/chimera/triggerSet.py", line 83, in invoke self._funcData, triggerData) File "/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py", line 329, in portOnTop self.remove_webinfo(self.listen_port) File "/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py", line 369, in remove_webinfo with lock: File "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", line 120, in __enter__ self.acquire() File "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", line 32, in acquire self._createFile() File "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", line 86, in _createFile os.write(self.fd, "%d\n" % os.getpid()) OSError: [Errno 28] No space left on device Error processing trigger "Focus In": OSError: [Errno 28] No space left on device

File "/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py", line 86, in _createFile os.write(self.fd, "%d\n" % os.getpid())

See reply log for Python traceback. ################################################

if I unzip the file, I can open it without problems. Since I have many files to look and they are very big (> 300 MB zipped) I don't want to unzip every file whenever I have to look at the trajectory. Any help will be appreciated.

thanks,

Renato

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