Dear Chimera Team ! I intersted in chemistry. I use chimera 1.5 software for personal purposes, non - commercial. Chimera is a very usefull Tool. I like it :). I know Python language a little. I'm beginner programmer. I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW. My website is pythonchemia.aq.pl I have some questions: 1 - How to install pDynamo library ? from https://sites.google.com/site/pdynamomodeling/home for Chimera 1.5 automatically or manually ? 2 - How to install OpenBabel library ? from openbabel.org/wiki/Main_Page for Chimera 1.5 automatically or manually ? 3 - How to install Biopython library ? from http://biopython.org/wiki/Main_Page for Chimera 1.5 automatically or manually ? Please help me ! - I wait on answer. Sorry for my english Yours sincerely - Janusz Grabowski
Hi Janusz, Chimera has its own self-contained Python environment, so in order to install these packages so that you can use them from within Chimera you will need to use Chimera's Python whenever the installation procedure for a package calls on you to execute a Python script. For a script with no arguments that would be: chimera --nogui installation-script.py and for scripts with arguments: chimera --nogui --script "installation-script.py argument1 argument2 ..." On non-Mac platforms you can find the chimera executable in: <your chimera installation>/bin On Macs it is in: Chimera.app/Contents/Resources/bin While the 1.5 version of Chimera is nice enough, I would encourage you to upgrade to the 1.7 release candidate, which has many improvements. --Eric Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu On Jan 10, 2013, at 11:30 AM, pythonchemia Gazeta.pl wrote:
Dear Chimera Team !
I intersted in chemistry. I use chimera 1.5 software for personal purposes, non - commercial. Chimera is a very usefull Tool. I like it :). I know Python language a little. I'm beginner programmer. I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW. My website is pythonchemia.aq.pl I have some questions:
1 - How to install pDynamo library ? from https://sites.google.com/site/pdynamomodeling/home for Chimera 1.5 automatically or manually ?
2 - How to install OpenBabel library ? from openbabel.org/wiki/Main_Page for Chimera 1.5 automatically or manually ?
3 - How to install Biopython library ? from http://biopython.org/wiki/Main_Page for Chimera 1.5 automatically or manually ?
Please help me ! - I wait on answer. Sorry for my english
Yours sincerely - Janusz Grabowski _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
And it would help to use a more recent version of Chimera, either version 1.6.2 or the 1.7 release candidate. The newer releases have newer versions of Python and MMTK embedded in them with the associated improvements and bug fixes. -- Greg On 01/10/2013 11:30 AM, pythonchemia Gazeta.pl wrote:
I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW.
I sometime dream that Chimera would be packaged for Debian/Ubuntu :) On 01/11/2013 10:26 AM, Greg Couch wrote:
And it would help to use a more recent version of Chimera, either version 1.6.2 or the 1.7 release candidate. The newer releases have newer versions of Python and MMTK embedded in them with the associated improvements and bug fixes.
-- Greg
On 01/10/2013 11:30 AM, pythonchemia Gazeta.pl wrote:
I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW.
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
Francois, It might not be available via apt-get, but the downloaded version works just fine in Ubuntu and related distros. I am running Linux Mint 12.04 LTS 64-bit KDE 4.9.5 with UCSF Chimera 1.7 64-bit. --Rudy On Fri, 11 Jan 2013, Francois Berenger wrote:
I sometime dream that Chimera would be packaged for Debian/Ubuntu :)
On 01/11/2013 10:26 AM, Greg Couch wrote:
And it would help to use a more recent version of Chimera, either version 1.6.2 or the 1.7 release candidate. The newer releases have newer versions of Python and MMTK embedded in them with the associated improvements and bug fixes.
-- Greg
On 01/10/2013 11:30 AM, pythonchemia Gazeta.pl wrote:
I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW.
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
On 01/11/2013 12:28 PM, Rudy J. Richardson wrote:
Francois,
It might not be available via apt-get, but the downloaded version works just fine in Ubuntu and related distros. I am running Linux Mint 12.04 LTS 64-bit KDE 4.9.5 with UCSF Chimera 1.7 64-bit.
Of course it works well. I was meaning via aptitude/apt-get. ;)
--Rudy
On Fri, 11 Jan 2013, Francois Berenger wrote:
I sometime dream that Chimera would be packaged for Debian/Ubuntu :)
On 01/11/2013 10:26 AM, Greg Couch wrote:
And it would help to use a more recent version of Chimera, either version 1.6.2 or the 1.7 release candidate. The newer releases have newer versions of Python and MMTK embedded in them with the associated improvements and bug fixes.
-- Greg
On 01/10/2013 11:30 AM, pythonchemia Gazeta.pl wrote:
I have Chimera 1.5 with Python IDLE v 2.7 and Windows XP and MinGW.
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
participants (5)
-
Eric Pettersen -
Francois Berenger -
Greg Couch -
pythonchemia Gazeta.pl -
Rudy J. Richardson