It works. Thank you so much! Zhongjun On Thu, Apr 28, 2016 at 1:08 PM, Elaine Meng <meng@cgl.ucsf.edu> wrote:

Hi Zhongjun,

To save the fitted result, you would need to resample it on the grid of the other map. This will create a new, fitted map copy. Then if you open the new fitted copy and the other map in some other software, they will already be superimposed correctly. See “saving maps after fitting” at the bottom of this page for how to do it:

< http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html#afterfitting

...

I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco

...

On Apr 28, 2016, at 10:01 AM, Zhongjun Hu <zhongjun.online@gmail.com> wrote:

Hi, everyone:

Once I fit one map to the reference map, there will be some fitting result. I want to use this fitting result to align the map to the reference map using another software, for example, EMAN. How do I this? It seems that I am not clear about the fitting result, could anyone give some idea? or, is there other protocol/software to do this? Thank you!

Best, Zhongjun