command line to define a plane
Dear all, is there a way to define a plane from the command line. Something that would work providing a list of atoms or a selection. Cheers, JD Dr. Jean-Didier Maréchal Associate Professor The Computational Biotechnological Chemistry Team Unitat de Química Física Departament de Química Universitat Autònoma de Barcelona Edifici C.n. 08193 Cerdanyola (Barcelona) Tel: +34.935814936 e-mail: JeanDidier.Marechal@uab.es www: http://asklipio.qf.uab.es
Dear JD, Yes, there is actually a "define plane" command that takes an atom specification and various options. You can use the resulting plane (shown as a disc) for distance and angle measurements. <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/define.html> It can also be done with the Axes/Planes/Centroids tool. <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/structuremeas/structuremeas.html#axes> Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Oct 3, 2013, at 6:09 AM, Jean Didier Pie Marechal <JeanDidier.Marechal@uab.cat> wrote:
Dear all,
is there a way to define a plane from the command line. Something that would work providing a list of atoms or a selection. Cheers, JD
thanks a lot. Missed this one. JD **************************** Dr. Jean-Didier Maréchal Associate Professor The Computational Biotechnological Chemistry Team Departament de Química Universitat Autònoma de Barcelona Edifici C.n. 08193 Cerdanyola (Barcelona) Tel: +34.935814936 e-mail: JeanDidier.Marechal@uab.es www: http://g <http://asklipio.qf.uab.es>ent.uab.cat/jdidier<http://ent.uab.es/jdidier> 2013/10/3 Elaine Meng <meng@cgl.ucsf.edu>
Dear JD, Yes, there is actually a "define plane" command that takes an atom specification and various options. You can use the resulting plane (shown as a disc) for distance and angle measurements.
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/define.html>
It can also be done with the Axes/Planes/Centroids tool. < http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/structuremeas/stru...
Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Oct 3, 2013, at 6:09 AM, Jean Didier Pie Marechal < JeanDidier.Marechal@uab.cat> wrote:
Dear all,
is there a way to define a plane from the command line. Something that would work providing a list of atoms or a selection. Cheers, JD
participants (3)
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Elaine Meng -
Jean Didier Pie Marechal -
Jean-Didier Maréchal